View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17277_high_24 (Length: 507)
Name: NF17277_high_24
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_high_24 |
 |  |
|
| [»] scaffold0044 (1 HSPs) |
 |  |  |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 33)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 16 - 499
Target Start/End: Complemental strand, 1007661 - 1007181
Alignment:
| Q |
16 |
gttttcaaagtcaatacgctttgaagtaccgtccctacaattataaaaaacatagttgcctatccaaccctctttacacttgaggagcacttgttcatcc |
115 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||| ||||| ||||| ||| |||| ||||| || |||||||||||||||||||||| |
|
|
| T |
1007661 |
gttttcaaagtcaatactctttgaagtacagtccctacaattattaaaaatatagtcacctgcccaatcctctgtaggcttgaggagcacttgttcatcc |
1007562 |
T |
 |
| Q |
116 |
ttaaaaatatatattgccttcataaagattggcttgtaagaaatagtgaacaatttagtccaagactcgttatttccatattccctcattacccaaacat |
215 |
Q |
| |
|
||||||| ||||||||||||||||||| |||| ||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
1007561 |
ttaaaaacatatattgccttcataaaggctggcctgtccgaaatagtgaacaatttagtccaggactcgttatttccatattccttcattacccaaacat |
1007462 |
T |
 |
| Q |
216 |
catcaccacaaagcatagtcaaacaatccctaagaacactcaagtgaaaagtacaagcatcaaccttaccaatatcattgggcaacaaaaccttttggta |
315 |
Q |
| |
|
|||||||||||| || ||||| |||||||||| |||||||||||| |||| ||| |||| ||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
1007461 |
catcaccacaaaacacggtcaagcaatccctaaaaacactcaagtgcaaagaacatccatctaccttacca---tcattgggcaaaaaaaccttttggta |
1007365 |
T |
 |
| Q |
316 |
agaatcgttcttcatatctaaagaaaggataaaacattgacttttcttggtatctttagaaaccaaccaattaatcgttccgctcacacattgcccagat |
415 |
Q |
| |
|
|||||| ||| ||||||||| |||||| ||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||| |||||| |
|
|
| T |
1007364 |
agaatctttcctcatatctagagaaagaataaaacattgacttttctcagtatctttagaaaccagccaattaatcgtgccgctcacacattggccagat |
1007265 |
T |
 |
| Q |
416 |
ttctgaatagggacaacagcaaaaggtaacattgaaattcttttccatgaattggcacccaaagtatgaaccttcacttcatct |
499 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1007264 |
ttctgaatagggacaacagcaaaagggaacattggaattcttttccatgaattggcacccaaagtatgaaccttcacttcatct |
1007181 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 16 - 499
Target Start/End: Complemental strand, 1022689 - 1022209
Alignment:
| Q |
16 |
gttttcaaagtcaatacgctttgaagtaccgtccctacaattataaaaaacatagttgcctatccaaccctctttacacttgaggagcacttgttcatcc |
115 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||| |||| |||| | ||| || |||||||||||||||||||||| |
|
|
| T |
1022689 |
gttttcaaagtcaatactctttgaagtaccgtccctacaattattaaaaatatagtcgcctgcccaatcttctgtaggcttgaggagcacttgttcatcc |
1022590 |
T |
 |
| Q |
116 |
ttaaaaatatatattgccttcataaagattggcttgtaagaaatagtgaacaatttagtccaagactcgttatttccatattccctcattacccaaacat |
215 |
Q |
| |
|
||||||| ||||||||||||||||||| ||| |||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
1022589 |
ttaaaaacatatattgccttcataaaggccggcctgtacaaaatagtgaacaatttagtccatgactcgttatttccatattccttcattacccaaacat |
1022490 |
T |
 |
| Q |
216 |
catcaccacaaagcatagtcaaacaatccctaagaacactcaagtgaaaagtacaagcatcaaccttaccaatatcattgggcaacaaaaccttttggta |
315 |
Q |
| |
|
|||||||||||| || ||||| |||||||||| |||||||||||| |||| ||| |||| ||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
1022489 |
catcaccacaaaacacggtcaagcaatccctaaaaacactcaagtgcaaagaacatccatctaccttacca---tcattgggcaaaaaaaccttttggta |
1022393 |
T |
 |
| Q |
316 |
agaatcgttcttcatatctaaagaaaggataaaacattgacttttcttggtatctttagaaaccaaccaattaatcgttccgctcacacattgcccagat |
415 |
Q |
| |
|
|||||| ||| ||||||||| |||||| ||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||| |||||| |
|
|
| T |
1022392 |
agaatctttcctcatatctagagaaagaataaaacattgacttttctcagtatctttagaaaccagccaattaatcgtgccgctcacacattggccagat |
1022293 |
T |
 |
| Q |
416 |
ttctgaatagggacaacagcaaaaggtaacattgaaattcttttccatgaattggcacccaaagtatgaaccttcacttcatct |
499 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1022292 |
ttctgaatagggacaacagcaaaagggaacattggaattcttttccatgaattggcacccaaagtatgaaccttcacttcatct |
1022209 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 149 - 498
Target Start/End: Complemental strand, 997643 - 997294
Alignment:
| Q |
149 |
ttgtaagaaatagtgaacaatttagtccaagactcgttatttccatattccctcattacccaaacatcatcaccacaaagcatagtcaaacaatccctaa |
248 |
Q |
| |
|
|||||||| || ||||| | ||||||||||||||| ||||||||||||||| |||||||||||||| |||||||| ||| ||| |||| |||||||| | |
|
|
| T |
997643 |
ttgtaagatatggtgaatagtttagtccaagactctttatttccatattccttcattacccaaacaacatcaccagaaaacatgatcaagcaatccctga |
997544 |
T |
 |
| Q |
249 |
gaacactcaagtgaaaagtacaagcatcaaccttaccaatatcattgggcaacaaaaccttttggtaagaatcgttcttcatatctaaagaaaggataaa |
348 |
Q |
| |
|
||||||||||||||||| |||| ||||| |||||||| || |||||||||| |||||| ||||||||| |||||| ||| ||| | |||||| ||||| |
|
|
| T |
997543 |
gaacactcaagtgaaaattacatgcatctaccttacc---ataattgggcaacgaaacctcttggtaagactcgttcatcaaatcaagagaaagaataaa |
997447 |
T |
 |
| Q |
349 |
acattgacttttcttggtatctttagaaaccaaccaattaatcgttccgctcacacattgcccagat---ttctgaatagggacaacagcaaaaggtaac |
445 |
Q |
| |
|
| ||| ||||| ||| | |||||| ||| ||| |||||||||||| || |||||||||| ||||||| | ||||| |||| ||||| | |||| ||| |
|
|
| T |
997446 |
atatttactttgcttagaatcttttgaagccagccaattaatcgtgccactcacacatttcccagatagctgctgaacggggaaaacagaataagggaac |
997347 |
T |
 |
| Q |
446 |
attgaaattcttttccatgaattggcacccaaagtatgaaccttcacttcatc |
498 |
Q |
| |
|
| |||||| ||||||||||||||| ||||||||||| |||||| |||||||| |
|
|
| T |
997346 |
actgaaatgcttttccatgaattgatacccaaagtataaaccttaacttcatc |
997294 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 149 - 498
Target Start/End: Complemental strand, 1014033 - 1013684
Alignment:
| Q |
149 |
ttgtaagaaatagtgaacaatttagtccaagactcgttatttccatattccctcattacccaaacatcatcaccacaaagcatagtcaaacaatccctaa |
248 |
Q |
| |
|
|||||||| || ||||| | ||||||||||||||| ||||||||||||||| |||||||||||||| |||||||| ||| ||| |||| |||||||| | |
|
|
| T |
1014033 |
ttgtaagatatggtgaatagtttagtccaagactctttatttccatattccttcattacccaaacaacatcaccagaaaacatgatcaagcaatccctga |
1013934 |
T |
 |
| Q |
249 |
gaacactcaagtgaaaagtacaagcatcaaccttaccaatatcattgggcaacaaaaccttttggtaagaatcgttcttcatatctaaagaaaggataaa |
348 |
Q |
| |
|
||||||||||||||||| |||| ||||| |||||||| || |||||||||| |||||| ||||||||| |||||| ||| ||| | |||||| ||||| |
|
|
| T |
1013933 |
gaacactcaagtgaaaattacatgcatctaccttacc---ataattgggcaacgaaacctcttggtaagactcgttcatcaaatcaagagaaagaataaa |
1013837 |
T |
 |
| Q |
349 |
acattgacttttcttggtatctttagaaaccaaccaattaatcgttccgctcacacattgcccagat---ttctgaatagggacaacagcaaaaggtaac |
445 |
Q |
| |
|
| ||| ||||| ||| | |||||| ||| |||||||||||||||| || |||||||||| ||||||| ||||| |||| ||||| | |||| ||| |
|
|
| T |
1013836 |
atatttactttgcttagaatcttttgaagccaaccaattaatcgtgccactcacacatttcccagatagccgctgaacggggaaaacagaataagggaac |
1013737 |
T |
 |
| Q |
446 |
attgaaattcttttccatgaattggcacccaaagtatgaaccttcacttcatc |
498 |
Q |
| |
|
| |||||| ||||||||||||||| ||||||||||| |||||| |||||||| |
|
|
| T |
1013736 |
actgaaatgcttttccatgaattgatacccaaagtataaaccttaacttcatc |
1013684 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 150 - 223
Target Start/End: Complemental strand, 989462 - 989389
Alignment:
| Q |
150 |
tgtaagaaatagtgaacaatttagtccaagactcgttatttccatattccctcattacccaaacatcatcacca |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| || || ||||||||||||||||||||||| |
|
|
| T |
989462 |
tgtaagaaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatcatcacca |
989389 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 148 - 223
Target Start/End: Original strand, 4157927 - 4158002
Alignment:
| Q |
148 |
cttgtaagaaatagtgaacaatttagtccaagactcgttatttccatattccctcattacccaaacatcatcacca |
223 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||| | ||||||||||| |||| |
|
|
| T |
4157927 |
cttgtaagagatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcataacca |
4158002 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 150 - 218
Target Start/End: Original strand, 4142119 - 4142187
Alignment:
| Q |
150 |
tgtaagaaatagtgaacaatttagtccaagactcgttatttccatattccctcattacccaaacatcat |
218 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||||||||||||||| |||| | ||||||||||| |
|
|
| T |
4142119 |
tgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcat |
4142187 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 157 - 223
Target Start/End: Complemental strand, 3754659 - 3754593
Alignment:
| Q |
157 |
aatagtgaacaatttagtccaagactcgttatttccatattccctcattacccaaacatcatcacca |
223 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||||||||| |||| |||||||||||| ||||| |
|
|
| T |
3754659 |
aatagtaaacaatttagtccaagactctttatttccatattccttcataacccaaacatcaacacca |
3754593 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 150 - 218
Target Start/End: Original strand, 1931139 - 1931207
Alignment:
| Q |
150 |
tgtaagaaatagtgaacaatttagtccaagactcgttatttccatattccctcattacccaaacatcat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||| || || |||||||||| |||| |||| ||||||||||||| |
|
|
| T |
1931139 |
tgtaagaaatagtgaacaatttagtccaggagtctttatttccatgttccatcataacccaaacatcat |
1931207 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 160 - 223
Target Start/End: Original strand, 803213 - 803276
Alignment:
| Q |
160 |
agtgaacaatttagtccaagactcgttatttccatattccctcattacccaaacatcatcacca |
223 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
803213 |
agtgaacaacttagtccaagactctttatttccatattctttcataacccaaacatcatcacca |
803276 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 151 - 226
Target Start/End: Original strand, 2678385 - 2678460
Alignment:
| Q |
151 |
gtaagaaatagtgaacaatttagtccaagactcgttatttccatattccctcattacccaaacatcatcaccacaa |
226 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||| || |||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
2678385 |
gtaaggaatagtgaacaatttagtccatgactctttttttccatattgtttcataacccaaacatcatcaccacaa |
2678460 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 152 - 218
Target Start/End: Complemental strand, 968735 - 968669
Alignment:
| Q |
152 |
taagaaatagtgaacaatttagtccaagactcgttatttccatattccctcattacccaaacatcat |
218 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||| |||||||||| |||| |||| ||||||||||||| |
|
|
| T |
968735 |
taagaaatagtgaataatttagtccatgactctttatttccatgttccttcataacccaaacatcat |
968669 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 150 - 218
Target Start/End: Original strand, 2696717 - 2696785
Alignment:
| Q |
150 |
tgtaagaaatagtgaacaatttagtccaagactcgttatttccatattccctcattacccaaacatcat |
218 |
Q |
| |
|
||||||| | ||||||||||||| |||||||||| ||||||||||||||| |||| | ||||||||||| |
|
|
| T |
2696717 |
tgtaagatacagtgaacaatttaatccaagactctttatttccatattccttcataatccaaacatcat |
2696785 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 153 - 223
Target Start/End: Original strand, 1940567 - 1940637
Alignment:
| Q |
153 |
aagaaatagtgaacaatttagtccaagactcgttatttccatattccctcattacccaaacatcatcacca |
223 |
Q |
| |
|
||||||||||||||||||||||||| || || | |||||||| |||| |||| ||||||||||||| |||| |
|
|
| T |
1940567 |
aagaaatagtgaacaatttagtccacgagtcttgatttccatgttccttcataacccaaacatcatgacca |
1940637 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 152 - 225
Target Start/End: Original strand, 2686299 - 2686375
Alignment:
| Q |
152 |
taagaaatagtgaacaatttagtccaagactcgttatttccatattccctc---attacccaaacatcatcaccaca |
225 |
Q |
| |
|
|||| |||||||||||||||| |||||||||| || |||||||||||| || || |||||||||||||||||||| |
|
|
| T |
2686299 |
taaggaatagtgaacaatttattccaagactctttttttccatattccttcataataacccaaacatcatcaccaca |
2686375 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 145 - 223
Target Start/End: Complemental strand, 3746079 - 3746001
Alignment:
| Q |
145 |
tggcttgtaagaaatagtgaacaatttagtccaagactcgttatttccatattccctcattacccaaacatcatcacca |
223 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||||| | ||| |||||||| |||| | ||||| |||||||||| |
|
|
| T |
3746079 |
tggcttgtaaggaatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcacca |
3746001 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 154 - 246
Target Start/End: Original strand, 1936969 - 1937061
Alignment:
| Q |
154 |
agaaatagtgaacaatttagtccaagactcgttatttccatattccctcattacccaaacatcatcaccacaaagcatagtcaaacaatccct |
246 |
Q |
| |
|
|||||||||||||||||||| ||| || || |||||| ||||||| |||| ||||||||||||| |||| ||| ||| |||||||||||| |
|
|
| T |
1936969 |
agaaatagtgaacaatttagaccaggattctttatttttatattccttcataacccaaacatcataaccaaaaaccatgcacaaacaatccct |
1937061 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 151 - 223
Target Start/End: Original strand, 7432040 - 7432112
Alignment:
| Q |
151 |
gtaagaaatagtgaacaatttagtccaagactcgttatttccatattccctcattacccaaacatcatcacca |
223 |
Q |
| |
|
||||||||| ||||||||||||||||| || || ||||||||||||||| |||| ||||||||||| |||| |
|
|
| T |
7432040 |
gtaagaaatggtgaacaatttagtccacgattctttatttccatattccttcatactccaaacatcatgacca |
7432112 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 12133161 - 12133097
Alignment:
| Q |
152 |
taagaaatagtgaacaatttagtccaagactcgttatttccatattccctcattacccaaacatc |
216 |
Q |
| |
|
||||||| | |||||||||||||||| ||||| |||||||||| |||||||| ||||||||||| |
|
|
| T |
12133161 |
taagaaacattgaacaatttagtccacgactctctatttccatactccctcataacccaaacatc |
12133097 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 153 - 216
Target Start/End: Complemental strand, 2442102 - 2442039
Alignment:
| Q |
153 |
aagaaatagtgaacaatttagtccaagactcgttatttccatattccctcattacccaaacatc |
216 |
Q |
| |
|
|||||| ||||||||||||||||||||| || ||||||||||| ||| |||| | ||||||||| |
|
|
| T |
2442102 |
aagaaagagtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc |
2442039 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 165 - 216
Target Start/End: Complemental strand, 2456300 - 2456249
Alignment:
| Q |
165 |
acaatttagtccaagactcgttatttccatattccctcattacccaaacatc |
216 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||| |||| ||||||||||| |
|
|
| T |
2456300 |
acaatttagtccaagagtctttatttccatattccttcataacccaaacatc |
2456249 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 223
Target Start/End: Complemental strand, 2459346 - 2459268
Alignment:
| Q |
145 |
tggcttgtaagaaatagtgaacaatttagtccaagactcgttatttccatattccctcattacccaaacatcatcacca |
223 |
Q |
| |
|
|||| ||||||||| || |||||||| ||||||||||| ||||||||||||||| |||| | ||||||| ||| |||| |
|
|
| T |
2459346 |
tggcatgtaagaaacggtaaacaattttgtccaagactctttatttccatattccttcataatccaaacaacatgacca |
2459268 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 167 - 216
Target Start/End: Complemental strand, 13498273 - 13498224
Alignment:
| Q |
167 |
aatttagtccaagactcgttatttccatattccctcattacccaaacatc |
216 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||| | ||||||||| |
|
|
| T |
13498273 |
aatttagtccaagactctttatttccatattccttcataatccaaacatc |
13498224 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 154 - 387
Target Start/End: Complemental strand, 956443 - 956210
Alignment:
| Q |
154 |
agaaatagtgaacaatttagtccaagactcgttatttccatattccctcattacccaaacatcatcaccacaaagcatagtcaaacaatccctaagaaca |
253 |
Q |
| |
|
||||||| ||||||||||| ||||||||| || |||||||||||| |||| | ||||||||| |||| ||| ||| ||| |||||||| | |||| |
|
|
| T |
956443 |
agaaataatgaacaatttatgccaagactctttttttccatattccttcataatccaaacatcgcaaccaaaaatcatgcacaagcaatccctgaaaaca |
956344 |
T |
 |
| Q |
254 |
ctcaagtgaaaagtacaagcatcaaccttaccaatatcattgggcaacaaaaccttttggtaagaatcgttcttcatatctaaagaaaggataaaacatt |
353 |
Q |
| |
|
||||||| |||| || ||||| |||| || || || |||||||||||||| ||| ||||| |||||| ||| ||| | ||||| | |||| ||| |
|
|
| T |
956343 |
ctcaagttcaaagaacgtgcatccacctcgcc---ataatcgggcaacaaaacctcttgataagactcgttcctcaaatcaagagaaacaacaaaatatt |
956247 |
T |
 |
| Q |
354 |
gacttttcttgg---tatctttagaaaccaaccaatt |
387 |
Q |
| |
|
|| ||||| | | ||||||||||||||||||||| |
|
|
| T |
956246 |
gatttttcctagcataatctttagaaaccaaccaatt |
956210 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 216
Target Start/End: Original strand, 771499 - 771550
Alignment:
| Q |
165 |
acaatttagtccaagactcgttatttccatattccctcattacccaaacatc |
216 |
Q |
| |
|
|||||||||||||||| || |||||||||||||| |||| ||||||||||| |
|
|
| T |
771499 |
acaatttagtccaagagtctgtatttccatattccttcataacccaaacatc |
771550 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 216
Target Start/End: Original strand, 2644354 - 2644413
Alignment:
| Q |
157 |
aatagtgaacaatttagtccaagactcgttatttccatattccctcattacccaaacatc |
216 |
Q |
| |
|
||||||| ||||||||||||||||||| | ||||||||| ||| |||| | ||||||||| |
|
|
| T |
2644354 |
aatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatc |
2644413 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 216
Target Start/End: Original strand, 2659144 - 2659203
Alignment:
| Q |
157 |
aatagtgaacaatttagtccaagactcgttatttccatattccctcattacccaaacatc |
216 |
Q |
| |
|
||||||| ||||||||||||||||||| | ||||||||| ||| |||| | ||||||||| |
|
|
| T |
2659144 |
aatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatc |
2659203 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 216
Target Start/End: Original strand, 7334231 - 7334290
Alignment:
| Q |
157 |
aatagtgaacaatttagtccaagactcgttatttccatattccctcattacccaaacatc |
216 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||| || ||| |||| | ||||||||| |
|
|
| T |
7334231 |
aatagtgtacaatttagtccaagactctttatttccgtagtccttcatgatccaaacatc |
7334290 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 1891064 - 1891122
Alignment:
| Q |
165 |
acaatttagtccaagactcgttatttccatattccctcattacccaaacatcatcacca |
223 |
Q |
| |
|
|||||||||||||||| || |||||||||| |||| |||| | ||||||||||| |||| |
|
|
| T |
1891064 |
acaatttagtccaagagtctttatttccatgttccttcataatccaaacatcatgacca |
1891122 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 2631408 - 2631358
Alignment:
| Q |
165 |
acaatttagtccaagactcgttatttccatattccctcattacccaaacat |
215 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||| |||| | |||||||| |
|
|
| T |
2631408 |
acaatttagtccaagactcttgatttccatattccttcataatccaaacat |
2631358 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 9608346 - 9608396
Alignment:
| Q |
167 |
aatttagtccaagactcgttatttccatattccctcattacccaaacatca |
217 |
Q |
| |
|
|||||||||||||| || |||||||||||||| |||| |||||||||||| |
|
|
| T |
9608346 |
aatttagtccaagaatctatatttccatattccttcataacccaaacatca |
9608396 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 456 - 497
Target Start/End: Original strand, 1891349 - 1891390
Alignment:
| Q |
456 |
ttttccatgaattggcacccaaagtatgaaccttcacttcat |
497 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
1891349 |
ttttccaagaattggtgcccaaagtatgaaccttcacttcat |
1891390 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 198
Target Start/End: Complemental strand, 13479649 - 13479596
Alignment:
| Q |
145 |
tggcttgtaagaaatagtgaacaatttagtccaagactcgttatttccatattc |
198 |
Q |
| |
|
|||| ||| |||||||||||||||||| ||||||||||| | | |||||||||| |
|
|
| T |
13479649 |
tggcatgttagaaatagtgaacaattttgtccaagactcttgaattccatattc |
13479596 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 117; Significance: 2e-59; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 98 - 492
Target Start/End: Original strand, 22672060 - 22672442
Alignment:
| Q |
98 |
aggagcacttgttcatccttaaaaatatatattgccttcataaagattggcttgtaagaaatagtgaacaatttagtccaagactcgttatttccatatt |
197 |
Q |
| |
|
|||||||| |||||||||| |||||||| |||||||| |||||| |||| ||||||||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
22672060 |
aggagcacatgttcatcctcaaaaatatgtattgcctggataaaggatggcatgtaagaaatagtgaacaatttagtccaagattccttatttccatatt |
22672159 |
T |
 |
| Q |
198 |
ccctcattacccaaacatcatcaccacaaagcatagtcaaacaatccctaagaacactcaagtgaaaagtacaagcatcaaccttaccaatatcattggg |
297 |
Q |
| |
|
|| ||||||||||||| || |||||| ||| || |||| |||||||| |||||||||||| | ||| ||| |||||| |||| || || |||||| |
|
|
| T |
22672160 |
ccttcattacccaaacgtcgtcaccagaaaacaagatcaagcaatccctgagaacactcaagagcaaaatacgagcatctacctctcc---ataattggg |
22672256 |
T |
 |
| Q |
298 |
caacaaaaccttttggtaagaatcgttcttcatatctaaagaaaggataaaacattgacttttcttggtatctttagaaaccaaccaattaatcgttccg |
397 |
Q |
| |
|
|||||||| || || |||||| || ||| || ||| | ||||| |||||||||||||||||| |||||| |||||||||||||||| || |
|
|
| T |
22672257 |
caacaaaatctctttgtaagactcattccccaaatcaagagaaataataaaacattgacttttc---------ttagaagccaaccaattaatcgtgcca |
22672347 |
T |
 |
| Q |
398 |
ctcacacattgcccagatttctgaatagggacaacagcaaaaggtaacattgaaattcttttccatgaattggcacccaaagtatgaaccttcac |
492 |
Q |
| |
|
||||||||||||||||||| || ||| || | || || |||| ||||||| ||| |||||||||||||||| ||||||| ||| ||||||||| |
|
|
| T |
22672348 |
ctcacacattgcccagattgctcaatgggtgaagcaacataagggaacattggaatgcttttccatgaattggtacccaaattataaaccttcac |
22672442 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 154 - 223
Target Start/End: Original strand, 20019761 - 20019830
Alignment:
| Q |
154 |
agaaatagtgaacaatttagtccaagactcgttatttccatattccctcattacccaaacatcatcacca |
223 |
Q |
| |
|
||||| |||||||||||||||||||||||| | | ||||||||||| |||| ||||||||||||| |||| |
|
|
| T |
20019761 |
agaaagagtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattacca |
20019830 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 154 - 204
Target Start/End: Original strand, 20016174 - 20016224
Alignment:
| Q |
154 |
agaaatagtgaacaatttagtccaagactcgttatttccatattccctcat |
204 |
Q |
| |
|
||||| |||||||||||||||||||||||| | | ||||||||||| |||| |
|
|
| T |
20016174 |
agaaagagtgaacaatttagtccaagactcttgaattccatattccttcat |
20016224 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 150 - 221
Target Start/End: Complemental strand, 11081879 - 11081808
Alignment:
| Q |
150 |
tgtaagaaatagtgaacaatttagtccaagactcgttatttccatattccctcattacccaaacatcatcac |
221 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||| ||||||||||| ||| |||| |||||||||||||||| |
|
|
| T |
11081879 |
tgtaaggaatagtaaacaatttagtccaagactctttatttccatactccttcataacccaaacatcatcac |
11081808 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 156 - 223
Target Start/End: Original strand, 23766853 - 23766920
Alignment:
| Q |
156 |
aaatagtgaacaatttagtccaagactcgttatttccatattccctcattacccaaacatcatcacca |
223 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| |||| | ||||||||||| |||| |
|
|
| T |
23766853 |
aaatagtgaacaatttagtccaagactctttatttccatattctttcataatccaaacatcattacca |
23766920 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 156 - 223
Target Start/End: Original strand, 23816701 - 23816768
Alignment:
| Q |
156 |
aaatagtgaacaatttagtccaagactcgttatttccatattccctcattacccaaacatcatcacca |
223 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| |||| | ||||||||||| |||| |
|
|
| T |
23816701 |
aaatagtgaacaatttagtccaagactctttatttccatattctttcataatccaaacatcattacca |
23816768 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 158 - 227
Target Start/End: Original strand, 23769639 - 23769708
Alignment:
| Q |
158 |
atagtgaacaatttagtccaagactcgttatttccatattccctcattacccaaacatcatcaccacaaa |
227 |
Q |
| |
|
|||||||||||||||||||||||| | ||||| ||||||||| |||| | ||||||||||| || ||||| |
|
|
| T |
23769639 |
atagtgaacaatttagtccaagacgctttattcccatattccttcataatccaaacatcattactacaaa |
23769708 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 158 - 227
Target Start/End: Original strand, 23819487 - 23819556
Alignment:
| Q |
158 |
atagtgaacaatttagtccaagactcgttatttccatattccctcattacccaaacatcatcaccacaaa |
227 |
Q |
| |
|
|||||||||||||||||||||||| | ||||| ||||||||| |||| | ||||||||||| || ||||| |
|
|
| T |
23819487 |
atagtgaacaatttagtccaagacgctttattcccatattccttcataatccaaacatcattactacaaa |
23819556 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 151 - 223
Target Start/End: Original strand, 1427679 - 1427751
Alignment:
| Q |
151 |
gtaagaaatagtgaacaatttagtccaagactcgttatttccatattccctcattacccaaacatcatcacca |
223 |
Q |
| |
|
||||||||| ||||||| |||| |||||||||| |||||||||| || |||| |||||||||||||||||| |
|
|
| T |
1427679 |
gtaagaaattgtgaacagtttaatccaagactctgtatttccatactctttcataacccaaacatcatcacca |
1427751 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 23861018 - 23861079
Alignment:
| Q |
157 |
aatagtgaacaatttagtccaagactcgttatttccatattccctcattacccaaacatcat |
218 |
Q |
| |
|
||||||||||||||||||||||||| | || | ||||||||| |||||| ||||||||||| |
|
|
| T |
23861018 |
aatagtgaacaatttagtccaagacgctttcatcccatattccttcattatccaaacatcat |
23861079 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 166 - 220
Target Start/End: Complemental strand, 3181767 - 3181713
Alignment:
| Q |
166 |
caatttagtccaagactcgttatttccatattccctcattacccaaacatcatca |
220 |
Q |
| |
|
||||||| |||||||||| | ||||||||||||| |||| | ||||||||||||| |
|
|
| T |
3181767 |
caatttaatccaagactcttcatttccatattccttcataagccaaacatcatca |
3181713 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 157 - 227
Target Start/End: Original strand, 23764252 - 23764322
Alignment:
| Q |
157 |
aatagtgaacaatttagtccaagactcgttatttccatattccctcattacccaaacatcatcaccacaaa |
227 |
Q |
| |
|
||||||||||||| ||||||||||| | || | ||||||||| |||||| ||||||||||| || ||||| |
|
|
| T |
23764252 |
aatagtgaacaatgtagtccaagacgctttcatcccatattccttcattatccaaacatcattactacaaa |
23764322 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 216
Target Start/End: Complemental strand, 20293044 - 20292995
Alignment:
| Q |
167 |
aatttagtccaagactcgttatttccatattccctcattacccaaacatc |
216 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||| |||| | ||||||||| |
|
|
| T |
20293044 |
aatttagtccaagactctttaattccatattccttcataatccaaacatc |
20292995 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 23732226 - 23732165
Alignment:
| Q |
157 |
aatagtgaacaatttagtccaagactcgttatttccatattccctcattacccaaacatcat |
218 |
Q |
| |
|
||||||||||| |||| |||||||| | ||||| ||||||||| |||| | ||||||||||| |
|
|
| T |
23732226 |
aatagtgaacagtttattccaagacgctttattcccatattccttcataatccaaacatcat |
23732165 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 23814085 - 23814146
Alignment:
| Q |
157 |
aatagtgaacaatttagtccaagactcgttatttccatattccctcattacccaaacatcat |
218 |
Q |
| |
|
||||||||||||||||||||||||| | | | ||||||||| |||||| ||||||||||| |
|
|
| T |
23814085 |
aatagtgaacaatttagtccaagacgctgtcatcccatattccttcattatccaaacatcat |
23814146 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 150 - 223
Target Start/End: Complemental strand, 19727947 - 19727874
Alignment:
| Q |
150 |
tgtaagaaatagtgaacaatttagtccaagactcgttatttccatattccctcattacccaaacatcatcacca |
223 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||| |||||| ||||||| |||| |||||||||||||||||| |
|
|
| T |
19727947 |
tgtaagaaatagtgaacagtttagtccatgactctttatttgcatattctgtcataacccaaacatcatcacca |
19727874 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0044 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0044
Description:
Target: scaffold0044; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 165 - 217
Target Start/End: Complemental strand, 89194 - 89142
Alignment:
| Q |
165 |
acaatttagtccaagactcgttatttccatattccctcattacccaaacatca |
217 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||| ||||||| |||| |
|
|
| T |
89194 |
acaatttagtccaagactctttatttccatattccttcataacccaaatatca |
89142 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 216
Target Start/End: Original strand, 1078145 - 1078211
Alignment:
| Q |
150 |
tgtaagaaatagtgaacaatttagtccaagactcgttatttccatattccctcattacccaaacatc |
216 |
Q |
| |
|
||||||||| | |||||||||||||||| ||||| |||||||||| ||| |||| ||||||||||| |
|
|
| T |
1078145 |
tgtaagaaacattgaacaatttagtccacgactctctatttccatactccttcataacccaaacatc |
1078211 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 213
Target Start/End: Original strand, 7168688 - 7168738
Alignment:
| Q |
163 |
gaacaatttagtccaagactcgttatttccatattccctcattacccaaac |
213 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |||| | |||||| |
|
|
| T |
7168688 |
gaacaatttagtccaagaatcgttatttccatattccttcataagccaaac |
7168738 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 164 - 216
Target Start/End: Complemental strand, 36577418 - 36577366
Alignment:
| Q |
164 |
aacaatttagtccaagactcgttatttccatattccctcattacccaaacatc |
216 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||| |||| | ||||||||| |
|
|
| T |
36577418 |
aacaatttaatccaagactctttatttccatattccttcataatccaaacatc |
36577366 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 216
Target Start/End: Original strand, 7160752 - 7160805
Alignment:
| Q |
163 |
gaacaatttagtccaagactcgttatttccatattccctcattacccaaacatc |
216 |
Q |
| |
|
|||||||||||||||||| || ||||||||||| ||| |||| | ||||||||| |
|
|
| T |
7160752 |
gaacaatttagtccaagaatcattatttccatactccttcataagccaaacatc |
7160805 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 213
Target Start/End: Original strand, 370773 - 370833
Alignment:
| Q |
153 |
aagaaatagtgaacaatttagtccaagactcgttatttccatattccctcattacccaaac |
213 |
Q |
| |
|
|||||||| ||||||||||||||||||| || ||||||||||| | | |||| |||||||| |
|
|
| T |
370773 |
aagaaatattgaacaatttagtccaagaatctttatttccataattcttcataacccaaac |
370833 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 19119115 - 19119065
Alignment:
| Q |
164 |
aacaatttagtccaagactcgttatttccatattccctcattacccaaaca |
214 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||| |||| | ||||||| |
|
|
| T |
19119115 |
aacaatttagtccaagactcttcatttccatattccttcatcaaccaaaca |
19119065 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 19126409 - 19126359
Alignment:
| Q |
164 |
aacaatttagtccaagactcgttatttccatattccctcattacccaaaca |
214 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||| |||| | ||||||| |
|
|
| T |
19126409 |
aacaatttagtccaagactcttcatttccatattccttcatcaaccaaaca |
19126359 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 150 - 198
Target Start/End: Original strand, 51381440 - 51381488
Alignment:
| Q |
150 |
tgtaagaaatagtgaacaatttagtccaagactcgttatttccatattc |
198 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||| | |||||||||||| |
|
|
| T |
51381440 |
tgtaaggaatactgaacaatttagtccaagactcttcatttccatattc |
51381488 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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