View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17277_high_25 (Length: 505)
Name: NF17277_high_25
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_high_25 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 13 - 486
Target Start/End: Complemental strand, 4555943 - 4555470
Alignment:
| Q |
13 |
acctgtgcagtgctgtattcatcatccttttcaacaaatggatagcacacttgaatgtctcctttacctcccacaaagcggaatgcagttgcgaacaaca |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4555943 |
acctgtgcagtgctgtattcatcatccttttcaacaaatggatagcacacttgaatgtctcctttacctcccacaaagcggaatgcagttgcgaacaaca |
4555844 |
T |
|
| Q |
113 |
ttgccttctggttcacataaatatcaaatcagcaaagtagaagagtttgtagcttcaactacaagaaataacgctgaagttggttttataacgctcataa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
4555843 |
ttgccttctggttcacataaatatcaaatcagcaaagtagaagaatttgtagcttcaactacaagaaataacgctgaagttggttttgtaacgctcataa |
4555744 |
T |
|
| Q |
213 |
agtttgtaaagcaagcaagttactagcaatttttaatttattcattttaaatctgcgttttctgcggtcacaaagtcactgcagtcatgaaatcgacatt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4555743 |
agtttgtaaagcaagcaagttactagcaatttttaatttattcattttaagtctgcgttttctgcggtcacaaagtcactgcagtcatgaaatcgacatt |
4555644 |
T |
|
| Q |
313 |
attgttaattagataaaaatcagacgactcatttcgagtatagattttgaattcaattttctaaagtcagaatataaatcgtctgatttaattagcataa |
412 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4555643 |
attgttaattagataaagatcagacgactcattccgagtataaattttgaattcaattttctaaagtcagaatataaatcgtctgatttaattagcataa |
4555544 |
T |
|
| Q |
413 |
tgtataataaaaaattgtgtttgagaaataatgtcaaatcatgatccaacattttgtagctgtagcatgcatag |
486 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4555543 |
tgtataataaaaaattgtgtttgagaaataatgtcaaatcatgatccaacattttttagctgtagcatgcatag |
4555470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University