View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17277_high_26 (Length: 486)
Name: NF17277_high_26
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_high_26 |
 | |
|
| [»] scaffold0187 (3 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 1 - 477
Target Start/End: Original strand, 45759116 - 45759592
Alignment:
| Q |
1 |
caaaattgacattgttcatatcagacactaatagacattattaattgtggtcaacacgacatatgaatttatgatcaatacctataaagacaataaatta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45759116 |
caaaattgacattgttcatatcagacactaatagacattattaattgtggtcaacacgacatatgaatttatgatcaatacctataaagacaataaatta |
45759215 |
T |
|
| Q |
101 |
aaggtacagtaatgatagtagtaattaaaatttcataatcctgaaaaattctaatgctatgcttaagcttgaagttgatgatgagtttctgagtccgaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45759216 |
aaggtacagtaatgatagtagtaattaaaatttcataatcctgaaaaattctaatgctatgcttaagcttgaagttgatgatgagtttctgagtccgaaa |
45759315 |
T |
|
| Q |
201 |
tgtgcttcttgtatagagcaataaaagctgtagctctcatgtcaataacaggatcagctaccccccatgtacctttgtcttcatcactaggccaaatttt |
300 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45759316 |
tgtgcttcttgtatcgagcaataaaagctgtagctctcatgtcaataacaggatcagctaccccccatgtacctttgtcttcatcactaggccaaatttt |
45759415 |
T |
|
| Q |
301 |
ggaaactggctttggcccttcttcataagctttgtaattatgcttgcttgatttgaaaatgttaaaaacagatagaaaagatgaagatttcctttgccta |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45759416 |
ggaaactggctttggcccttcttcataagctttgtaattatgcttgcttgatttgaaaatgttaaaaacagatagaaaagatgaagatttcctttgccta |
45759515 |
T |
|
| Q |
401 |
tttttgcctcccattatgtgaagaaagacactactagtgagtgagttacccttctttggcttattggttagaataat |
477 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45759516 |
tttttgcctcccattatgtgaagaaagacactactagtgagtgagttacccttctttggcttattggttagaataat |
45759592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 206 - 294
Target Start/End: Original strand, 27289 - 27377
Alignment:
| Q |
206 |
ttcttgtatagagcaataaaagctgtagctctcatgtcaataacaggatcagctaccccccatgtacctttgtcttcatcactaggcca |
294 |
Q |
| |
|
||||||||| ||||||| || ||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||| ||||| |
|
|
| T |
27289 |
ttcttgtattgagcaatgaatgctgtagctctcatgtcaataacaggatcagctacaccccaactacctctgtcttcatcacttggcca |
27377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 206 - 294
Target Start/End: Original strand, 6633 - 6721
Alignment:
| Q |
206 |
ttcttgtatagagcaataaaagctgtagctctcatgtcaataacaggatcagctaccccccatgtacctttgtcttcatcactaggcca |
294 |
Q |
| |
|
||||||||| ||||||| || ||||||||||||||||||||||||||||||||||| ||||| | ||| | ||||||||||| ||||| |
|
|
| T |
6633 |
ttcttgtattgagcaatgaatgctgtagctctcatgtcaataacaggatcagctacaccccaacttcctctatcttcatcacttggcca |
6721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 206 - 294
Target Start/End: Original strand, 16961 - 17049
Alignment:
| Q |
206 |
ttcttgtatagagcaataaaagctgtagctctcatgtcaataacaggatcagctaccccccatgtacctttgtcttcatcactaggcca |
294 |
Q |
| |
|
||||||||| ||||||| || ||||||||||||||||||||||||||||||||||| ||||| | ||| | ||||||||||| ||||| |
|
|
| T |
16961 |
ttcttgtattgagcaatgaatgctgtagctctcatgtcaataacaggatcagctacaccccaacttcctctatcttcatcacttggcca |
17049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 206 - 294
Target Start/End: Complemental strand, 37855615 - 37855527
Alignment:
| Q |
206 |
ttcttgtatagagcaataaaagctgtagctctcatgtcaataacaggatcagctaccccccatgtacctttgtcttcatcactaggcca |
294 |
Q |
| |
|
||||||||| ||||||| || ||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||| ||||| |
|
|
| T |
37855615 |
ttcttgtattgagcaatgaatgctgtagctctcatgtcaataacaggatcagctacaccccaactacctctgtcttcatcacttggcca |
37855527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 206 - 294
Target Start/End: Complemental strand, 37867803 - 37867715
Alignment:
| Q |
206 |
ttcttgtatagagcaataaaagctgtagctctcatgtcaataacaggatcagctaccccccatgtacctttgtcttcatcactaggcca |
294 |
Q |
| |
|
||||||||| ||||||| || ||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||| ||||| |
|
|
| T |
37867803 |
ttcttgtattgagcaatgaatgctgtagctctcatgtcaataacaggatcagctacaccccaactacctctgtcttcatcacttggcca |
37867715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 206 - 294
Target Start/End: Complemental strand, 37881843 - 37881755
Alignment:
| Q |
206 |
ttcttgtatagagcaataaaagctgtagctctcatgtcaataacaggatcagctaccccccatgtacctttgtcttcatcactaggcca |
294 |
Q |
| |
|
||||||||| ||||||| || ||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||| ||||| |
|
|
| T |
37881843 |
ttcttgtattgagcaatgaatgctgtagctctcatgtcaataacaggatcagctacaccccaactacctctgtcttcatcacttggcca |
37881755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 206 - 294
Target Start/End: Complemental strand, 37911788 - 37911700
Alignment:
| Q |
206 |
ttcttgtatagagcaataaaagctgtagctctcatgtcaataacaggatcagctaccccccatgtacctttgtcttcatcactaggcca |
294 |
Q |
| |
|
||||||||| ||||||| || ||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||| ||||| |
|
|
| T |
37911788 |
ttcttgtattgagcaatgaatgctgtagctctcatgtcaataacaggatcagctacaccccaactacctctgtcttcatcacttggcca |
37911700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University