View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_high_27 (Length: 473)
Name: NF17277_high_27
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 304
Target Start/End: Original strand, 16859882 - 16860171
Alignment:
| Q |
18 |
atttcatggctaaaggaagcttagaccggtagttttttgatgaggcaaaatccaacttttctatcacattgtattttgtctgagtgtgtggatgagaatg |
117 |
Q |
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| T |
16859882 |
atttcatggctaaaggaagcttagactggtagttttttgatgaggcaaaatccaacttatctatcacattgtattttgtctgagtgtgtggatgagaatg |
16859981 |
T |
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| Q |
118 |
gaggctcgtaggttgtgattctctctggagccatgaaacgacagcgcatgctgctaggttgatggaagaggtagagggatttgaggagtgcgtgttaatg |
217 |
Q |
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| T |
16859982 |
gaggctcgtaggttgtgatactctctggagccatgaaacgacagcgcatgctgctaggttgatggaagaggtagagggatttgaggagtgcgtgttaatg |
16860081 |
T |
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| Q |
218 |
caggtctcggtaaaatgattgaccatctctctttacacattcttca----acatcatgcgatttatatctatc-tacttcagatttgagttg |
304 |
Q |
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| T |
16860082 |
caggtctcggtaaaatgattgatcatctctcttt--acattcttcaacgtacatcatgcgatttatatctatcttatttcagatttgagttg |
16860171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 322 - 384
Target Start/End: Original strand, 16861786 - 16861848
Alignment:
| Q |
322 |
cattttgcattggaggatttgtactcatccatttgttcatgttattagtattatacaaattgt |
384 |
Q |
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| T |
16861786 |
cattttgcattggaggatttgtactcatccatttgttcatgtcattagtattatacaaattgt |
16861848 |
T |
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