View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_high_29 (Length: 471)
Name: NF17277_high_29
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_high_29 |
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Alignment Details
Target: chr4 (Bit Score: 441; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Complemental strand, 39491720 - 39491260
Alignment:
| Q |
1 |
cacccttggatcgttcttaacaaccaattcactgataaacttattgaagttcttgctagaactaccaccttcctgtaaagtttttcttgccaactcttta |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39491720 |
cacccttggatcgttcttaacaaccaattcactgataaacttattgaagttcttgctagaactaccaccttcctgtaaagtttttcttgccaactcttta |
39491621 |
T |
|
| Q |
101 |
atttccgtaaccctcttcttaatctcaccagcatttggaccttccaaaacctccttaatacacctctcaatctcttctacacttgcaaccccatcttccc |
200 |
Q |
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||||| ||| |||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39491620 |
atttctgtagccctcttcttaatctcaccagcatgtggcccttccaaaacctccctaatacacctctcaatctcttctacacttgcaaccccatcttccc |
39491521 |
T |
|
| Q |
201 |
catatttcacttttacaccattcctaaacacattctgaataagcatagcatttgttggttggtcagtccaagatggccaaccaataacaggcacaccagt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39491520 |
catatttcacttttacaccattcctaaacacattctgaataagcatagcatttgttggttggtcagtccaagatggccaaccaataacaggcacaccagt |
39491421 |
T |
|
| Q |
301 |
tatcaatgtctcaagtgttgagttccaaccacaatgacttagaaaacaagcaacagcagggtgcattaacaccttctcctgtgcacaccatttcacaacc |
400 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39491420 |
tatcaatgtctcaagtgttgagttccaaccacaatgacttagaaaacaagcaacagcagggtgcattaacaccttctcctgtgcacaccatttcacaacc |
39491321 |
T |
|
| Q |
401 |
aaacctctcccttcagtctctttcaaaaactcttttggtaattcataagcagcatcctttg |
461 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39491320 |
aaacctctcccttcagtctctttcaaaaactcttttggtaattcataagcagcatcctttg |
39491260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 3 - 461
Target Start/End: Original strand, 39287317 - 39287775
Alignment:
| Q |
3 |
cccttggatcgttcttaacaaccaattcactgataaacttattgaagttcttgctagaactaccaccttcctgtaaagtttttcttgccaactctttaat |
102 |
Q |
| |
|
|||||| || ||| ||||||| ||||||||| ||||| | |||||| || || |||||||||||| |||||| |||| ||||||||| | |||||||| |
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| T |
39287317 |
cccttgaattgtttttaacaatcaattcacttataaattgattgaaattattactagaactaccatcttcctccaaagcttttcttgcagaatctttaat |
39287416 |
T |
|
| Q |
103 |
ttccgtaaccctcttcttaatctcaccagcatttggaccttccaaaacctccttaatacacctctcaatctcttctacacttgcaaccccatcttcccca |
202 |
Q |
| |
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|||| || |||| |||||||||||||||||||| || ||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
39287417 |
ttccatagcccttttcttaatctcaccagcattaggcccttccataacctccctaatacacctctcaatctcttttacacttgcaaccccatcttcccca |
39287516 |
T |
|
| Q |
203 |
tatttcacttttacaccattcctaaacacattctgaataagcatagcatttgttggttggtcagtccaagatggccaaccaataacaggcacaccagtta |
302 |
Q |
| |
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|| |||||||| || ||||||||||||||||||| ||||||||| |||||||||||||| ||| |||||| ||||| | |||||||||||||||||||| |
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| T |
39287517 |
taattcactttcaccccattcctaaacacattctcaataagcattgcatttgttggttgatcaagccaagaaggccagcaaataacaggcacaccagtta |
39287616 |
T |
|
| Q |
303 |
tcaatgtctcaagtgttgagttccaaccacaatgacttagaaaacaagcaacagcagggtgcattaacaccttctcctgtgcacaccatttcacaaccaa |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39287617 |
tcaatgtctcaagtgttgagttccaaccacaatgacttagaaaacaagcaacagcagggtgcattaacaccttctcctgtgcacaccatttcacaaccaa |
39287716 |
T |
|
| Q |
403 |
acctctcccttcagtctctttcaaaaactcttttggtaattcataagcagcatcctttg |
461 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39287717 |
acctctcccttcagtctctttcaaaaactcttttggtaattcataagcagcatcctttg |
39287775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 39491779 - 39491729
Alignment:
| Q |
1 |
cacccttggatcgttcttaacaaccaattcactgataaacttattgaagtt |
51 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||| |||||||||||||||| |
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|
| T |
39491779 |
cacccttggatcgttcttaaaaaccaattccctggtaaacttattgaagtt |
39491729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 324 - 444
Target Start/End: Original strand, 5905995 - 5906115
Alignment:
| Q |
324 |
tccaaccacaatgacttagaaaacaagcaacagcagggtgcattaacaccttctcctgtgcacaccatttcacaaccaaacctctcccttcagtctcttt |
423 |
Q |
| |
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|||||||||||||| | ||||||||| || |||||||| |||| |||||||| || ||||||| | |||||||||||||| |||| || |||| |
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| T |
5905995 |
tccaaccacaatgagacaaaaaacaagccactgcagggtggcttaaaaccttctcttgattacaccatgttacaaccaaacctcttccttttgtttcttc |
5906094 |
T |
|
| Q |
424 |
caaaaactcttttggtaattc |
444 |
Q |
| |
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||||||| ||||||| ||||| |
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| T |
5906095 |
caaaaacccttttggaaattc |
5906115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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