View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_high_37 (Length: 443)
Name: NF17277_high_37
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_high_37 |
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| [»] chr6 (4 HSPs) |
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| [»] scaffold0166 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 260; Significance: 1e-145; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 160 - 443
Target Start/End: Complemental strand, 7326296 - 7326013
Alignment:
| Q |
160 |
gtgctaatagcttgcgttgtcaatgtgcttgatttttcggtatgaaatgaagctaatttcacttatttgcagcaaacaacattttagattatgccttatt |
259 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
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| T |
7326296 |
gtgccaatagcttgcgttgtcaatgtgcttgatttttcggtatgaaatgaagctaacttcacttatttgcagcaaacaacattttagattaggccttatt |
7326197 |
T |
|
| Q |
260 |
ttgcttttgaaataaaaatacttattttgttataaacatcctcaattttgttgggaatataggtgagtgtttccctccgaactagttttttcttttatgc |
359 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7326196 |
ttgcttttgaaataaaaatacttattttgttataaacatcctcaattttgttgggaatataggtgagtgtttccctccgaactagttttttcttttatgc |
7326097 |
T |
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| Q |
360 |
gagagtcaaaaaattggactcatgaccactaatttaaggtgatctaatttcttaccattcgaaccaactagtttctttcacttc |
443 |
Q |
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|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
7326096 |
gagactcaaaaaattggactcatgatcactaatttaaggtgatctaatttcttaccattcgaaccaactagtttttttcacttc |
7326013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 7326547 - 7326481
Alignment:
| Q |
13 |
atgaagggataaaactatccttatttatgtcatggaaaaaacatttactgatgccatttttgtttgt |
79 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7326547 |
atgaagggataaaattatccttatttatgtcatggaaaaaacatttactgatgccatttttgtttgt |
7326481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 79 - 144
Target Start/End: Complemental strand, 7326453 - 7326393
Alignment:
| Q |
79 |
tgaagaaataagtgtgtcccgtaagtatagttcagttggtagctatcaggaataatttgagtaggg |
144 |
Q |
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|||||||||||||||||||||||||| |||||||||||||| |||| |||||||||| |||| |
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| T |
7326453 |
tgaagaaataagtgtgtcccgtaagt-----tcagttggtagctaccagggataatttgagcaggg |
7326393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 137
Target Start/End: Complemental strand, 6922746 - 6922703
Alignment:
| Q |
94 |
gtcccgtaagtatagttcagttggtagctatcaggaataatttg |
137 |
Q |
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||||||||||| |||||||||||||||||| || |||||||||| |
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| T |
6922746 |
gtcccgtaagtgtagttcagttggtagctaccatgaataatttg |
6922703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 94 - 158
Target Start/End: Complemental strand, 35130723 - 35130658
Alignment:
| Q |
94 |
gtcccgtaagtatagttcagttggtagctatcaggaataatttgagta-gggccggggttcgaacc |
158 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||| |||||||| | | ||||||||||||||||| |
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|
| T |
35130723 |
gtcccgtaagtgtagttcagttggtagctaccagagataatttgtgcaggggccggggttcgaacc |
35130658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 13538367 - 13538317
Alignment:
| Q |
94 |
gtcccgtaagtatagttcagttggtagctatcaggaataatttgagtaggg |
144 |
Q |
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||||||||||| ||| |||||||||||||||||| |||||||| |||||| |
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| T |
13538367 |
gtcccgtaagtgtagctcagttggtagctatcagagataatttgtgtaggg |
13538317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 49479453 - 49479494
Alignment:
| Q |
95 |
tcccgtaagtatagttcagttggtagctatcaggaataattt |
136 |
Q |
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|||| ||||| |||||||||||||||||||||| |||||||| |
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| T |
49479453 |
tcccataagtgtagttcagttggtagctatcagaaataattt |
49479494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 158
Target Start/End: Complemental strand, 17882355 - 17882291
Alignment:
| Q |
94 |
gtcccgtaagtatagttcagttggtagctatcaggaataatttgagtagggccggggttcgaacc |
158 |
Q |
| |
|
||||||||||| |||||||||| |||||| ||| | |||||||| | |||| | ||||||||||| |
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| T |
17882355 |
gtcccgtaagtgtagttcagttagtagctttcatggataatttgtgcaggggcagggttcgaacc |
17882291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 157
Target Start/End: Complemental strand, 35010495 - 35010431
Alignment:
| Q |
94 |
gtcccgtaagtatagttcagttggtagctatcaggaataatttgagtagg-gccggggttcgaac |
157 |
Q |
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|
||||||||||| ||| |||||||||||||||||| |||||||| | ||| | |||||||||||| |
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| T |
35010495 |
gtcccgtaagtttagctcagttggtagctatcagagataatttgtgcaggagtcggggttcgaac |
35010431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0166 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0166
Description:
Target: scaffold0166; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 93 - 137
Target Start/End: Original strand, 35852 - 35896
Alignment:
| Q |
93 |
tgtcccgtaagtatagttcagttggtagctatcaggaataatttg |
137 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||| |
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| T |
35852 |
tgtctcgtaagtatagttcagttggtagctatcagagataatttg |
35896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 94 - 158
Target Start/End: Complemental strand, 30746074 - 30746010
Alignment:
| Q |
94 |
gtcccgtaagtatagttcagttggtagctatcaggaataatttgagtagggccggggttcgaacc |
158 |
Q |
| |
|
||||| |||||||| |||||||||| ||||||||||||||||| | |||| ||||||| ||||| |
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| T |
30746074 |
gtcccataagtataactcagttggtaactatcaggaataatttgtgcaggggcggggtttgaacc |
30746010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 9667343 - 9667293
Alignment:
| Q |
94 |
gtcccgtaagtatagttcagttggtagctatcaggaataatttgagtaggg |
144 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||| |||||||| |||||| |
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| T |
9667343 |
gtcccgtaagtgtagctcagttggtagctatcagagataatttgtgtaggg |
9667293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 93 - 137
Target Start/End: Original strand, 24793469 - 24793513
Alignment:
| Q |
93 |
tgtcccgtaagtatagttcagttggtagctatcaggaataatttg |
137 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||| |
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| T |
24793469 |
tgtctcgtaagtatagttcagttggtagctatcagagataatttg |
24793513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 29097888 - 29097928
Alignment:
| Q |
97 |
ccgtaagtatagttcagttggtagctatcaggaataatttg |
137 |
Q |
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|||||||| |||||||||||||| ||||||||||||||||| |
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| T |
29097888 |
ccgtaagtgtagttcagttggtaactatcaggaataatttg |
29097928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 158
Target Start/End: Original strand, 32594558 - 32594625
Alignment:
| Q |
92 |
gtgtcccgtaagtatagttcagttggtagctatcaggaataatttgagtag-ggccggggttcgaacc |
158 |
Q |
| |
|
|||| |||||||| ||||||||||||||| || |||||||||||| |||| || ||||||||||||| |
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| T |
32594558 |
gtgttccgtaagtgtagttcagttggtagttaataggaataatttgtgtagtggtcggggttcgaacc |
32594625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 137
Target Start/End: Original strand, 52093594 - 52093637
Alignment:
| Q |
94 |
gtcccgtaagtatagttcagttggtagctatcaggaataatttg |
137 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||| |||||||| |
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| T |
52093594 |
gtcccgtaagtatggctcagttggtagctatcagggataatttg |
52093637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 137
Target Start/End: Original strand, 52093749 - 52093792
Alignment:
| Q |
94 |
gtcccgtaagtatagttcagttggtagctatcaggaataatttg |
137 |
Q |
| |
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||||||||||||| | ||||||||||||||||||| |||||||| |
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|
| T |
52093749 |
gtcccgtaagtatggctcagttggtagctatcagggataatttg |
52093792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 93 - 127
Target Start/End: Original strand, 2276274 - 2276308
Alignment:
| Q |
93 |
tgtcccgtaagtatagttcagttggtagctatcag |
127 |
Q |
| |
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|||| |||||||||||||||||||||||||||||| |
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|
| T |
2276274 |
tgtctcgtaagtatagttcagttggtagctatcag |
2276308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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