View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_high_4 (Length: 739)
Name: NF17277_high_4
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 245 - 721
Target Start/End: Original strand, 49438075 - 49438558
Alignment:
| Q |
245 |
gatccctaaacttaacaaacctcatctagctcaaggttttcaagcttagggcaatgattgagcacttgcaccaacaaattccaattagagttgatagagt |
344 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49438075 |
gatccctaaacttaacaaacctcatctagctcaaggttttcaagcttagggcaatgattgagcacttgcaccaacaaattccaattagagttgatagagt |
49438174 |
T |
|
| Q |
345 |
gaagtttcaacttggtcagattatgaaaggtaggaatctcatcaaaacttcgatacatctaaaaacaagtaaacaacatagaaatatataccatca---- |
440 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49438175 |
gaagtttcaacttggtcagattatgaaaggtaggaatctcatcaaaacttcgatacatctaaaaacaagtaaacaacatagaaatatataccatcactca |
49438274 |
T |
|
| Q |
441 |
---gaaataaggtcaacattttcnnnnnnnnnnnnnnnnnnnnntcaacacatttcaccatcagtgtattcatatagcaataataaatttcaaaccttat |
537 |
Q |
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| T |
49438275 |
tcagaaataaggtcaacattttcaaaagaaaagcaaaaacaaaatcaacacatttcaccatcagtgtattcatatagcaataataaatttcaaaccttat |
49438374 |
T |
|
| Q |
538 |
ttagttctatgtgcagtttctccacattatgaagtgctttcaacggaaaatgacaataagtgtaaggcatttctgctttagtcaacttgcttaagcttaa |
637 |
Q |
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| T |
49438375 |
ttagttctatgtgcagtttctccacattatgaagtgctttcaacggaaaatgacaataagtgtaaggcatttctgctttagtcaacttgcttaagcttaa |
49438474 |
T |
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| Q |
638 |
ggtttcaccctcttgatgggtaaaagagtccttaagcgagaactttaaatgttctgtatgcaaatcttcaagaattggacatcc |
721 |
Q |
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| T |
49438475 |
ggtttcaccctcttgatgggtaaaagagtccttaagcgagaactttaaatgttctgtatgcaaatcttcaagaattggacatcc |
49438558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 49437836 - 49438008
Alignment:
| Q |
1 |
tttgcaaaactcttgcattcttcagaatatatattgttgacataagctcaccctgttggcctatgaaattctgaaatatgcaagttttgaggtgtagtga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49437836 |
tttgcaaaactcttgcattcttcagaatatatattgttgacataagctcaccctgttggcctatgaaattctgaaatatgcaagttttgaggtgtagtga |
49437935 |
T |
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| Q |
101 |
aaggcattgcggaacaaattttgggtcctcccaatttttctggacatgtagtcttctatcaatagtcgagccc |
173 |
Q |
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| T |
49437936 |
aaggcattgcggaacaaattttgggtccttccaatttttctggacatgtagtcttctatcaatagtcgagccc |
49438008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 504 - 607
Target Start/End: Complemental strand, 49415481 - 49415378
Alignment:
| Q |
504 |
tattcatatagcaataataaatttcaaaccttatttagttctatgtgcagtttctccacattatgaagtgctttcaacggaaaatgacaataagtgtaag |
603 |
Q |
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||||||||||||||||||||||||||||||| ||||| |||||||| ||||| || ||||||||||||||||||||| |||||||||||| ||||| ||| |
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| T |
49415481 |
tattcatatagcaataataaatttcaaacctgatttatttctatgtacagttccttcacattatgaagtgctttcaatggaaaatgacaaaaagtggaag |
49415382 |
T |
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| Q |
604 |
gcat |
607 |
Q |
| |
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|||| |
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| T |
49415381 |
gcat |
49415378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 281 - 453
Target Start/End: Original strand, 49426758 - 49426928
Alignment:
| Q |
281 |
ttttcaagcttagggcaatgattgagcacttgcaccaacaaattccaattagagttgatagagtgaagtttcaacttggtcagattatgaaaggtaggaa |
380 |
Q |
| |
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|||| ||| ||||||||||||||||||||||| ||||||||| ||| |||||||| ||||||| |||| | | |||| ||| ||||||||||||| |
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| T |
49426758 |
ttttgaaggttagggcaatgattgagcacttgtgccaacaaatgccagttagagtttatagagtaaagtgcaagggttgtcaaattgtgaaaggtaggaa |
49426857 |
T |
|
| Q |
381 |
tctcatcaaaacttcgatacatctaaaaacaagtaaacaacatagaaatatataccatcagaaataaggtcaa |
453 |
Q |
| |
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|||||||| ||| |||||||| || |||||| |||||||||| |||| |||||||| | |||||||||||| |
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| T |
49426858 |
tctcatcacaacctcgatacacct--aaacaaataaacaacatggaaaggtataccatgaaaaataaggtcaa |
49426928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 249 - 352
Target Start/End: Complemental strand, 43359814 - 43359711
Alignment:
| Q |
249 |
cctaaacttaacaaacctcatctagctcaaggttttcaagcttagggcaatgattgagcacttgcaccaacaaattccaattagagttgatagagtgaag |
348 |
Q |
| |
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|||||||||||||||||| | ||||||| |||| ||| ||||||||| ||||||||||||| || |||||| ||||||| |||||||||||||||| |
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| T |
43359814 |
cctaaacttaacaaacctgactaagctcaacattttgaaggttagggcaaggattgagcacttgtactaacaaacgccaattatagttgatagagtgaag |
43359715 |
T |
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| Q |
349 |
tttc |
352 |
Q |
| |
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|||| |
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| T |
43359714 |
tttc |
43359711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 248 - 373
Target Start/End: Complemental strand, 49415840 - 49415715
Alignment:
| Q |
248 |
ccctaaacttaacaaacctcatctagctcaaggttttcaagcttagggcaatgattgagcacttgcaccaacaaattccaattagagttgatagagtgaa |
347 |
Q |
| |
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||||||||||||||||||||| ||||||| |||| ||| | ||||| || ||||||||||| ||||||||| |||||||||||| ||||||| || |
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| T |
49415840 |
ccctaaacttaacaaacctcactaagctcaacattttgaaggctggggcagtggttgagcacttgtgccaacaaatgccaattagagtttatagagtaaa |
49415741 |
T |
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| Q |
348 |
gtttcaacttggtcagattatgaaag |
373 |
Q |
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|| ||| ||||||| |||||||||| |
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| T |
49415740 |
gtcccaagttggtcaaattatgaaag |
49415715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 17641141 - 17641278
Alignment:
| Q |
1 |
tttgcaaaactcttgcattcttcagaatatatattgttgacataagctcaccctgttggcctatgaaattctgaaatatgcaagttttgaggtgtagtga |
100 |
Q |
| |
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||||||||||| |||||||||||||||| | | ||| | | |||||| || | |||||||||||| || ||| | ||||| |||| ||||||| ||| |
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| T |
17641141 |
tttgcaaaacttttgcattcttcagaatgtttcttgccaatagaagctcgccttcttggcctatgaagtttagaactttgcaaattttaaggtgtaatga |
17641240 |
T |
|
| Q |
101 |
aaggcattgcggaacaaattttgggtcctcccaatttt |
138 |
Q |
| |
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|| ||||||||||||||| |||||||| ||||||||| |
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| T |
17641241 |
aaaacattgcggaacaaatattgggtccacccaatttt |
17641278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 245 - 388
Target Start/End: Original strand, 17641591 - 17641735
Alignment:
| Q |
245 |
gatccctaaacttaacaaacctcatctagctcaaggttttcaagcttagggcaatgat-tgagcacttgcaccaacaaattccaattagagttgatagag |
343 |
Q |
| |
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||||||||||||||| |||||| | ||||||| |||| ||| |||||||| || | |||||||||| ||| |||| |||||||||||| | |||| |
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| T |
17641591 |
gatccctaaacttaagaaacctgactaagctcaacattttgaaggttagggcagtgctatgagcacttgtgacaagaaatgccaattagagtttagagag |
17641690 |
T |
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| Q |
344 |
tgaagtttcaacttggtcagattatgaaaggtaggaatctcatca |
388 |
Q |
| |
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| | || ||| ||||||| ||||||||| || |||||||||||| |
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| T |
17641691 |
taatgtcccaagttggtcaaattatgaaaagtgggaatctcatca |
17641735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 43362389 - 43362355
Alignment:
| Q |
2 |
ttgcaaaactcttgcattcttcagaatatatattg |
36 |
Q |
| |
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||||||||||||||||||||||| ||||||||||| |
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| T |
43362389 |
ttgcaaaactcttgcattcttcacaatatatattg |
43362355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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