View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_high_42 (Length: 419)
Name: NF17277_high_42
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_high_42 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 129 - 410
Target Start/End: Original strand, 43324418 - 43324696
Alignment:
| Q |
129 |
gtgtttgttgaaaaagactcttctgtttggtttggactccgtataatttaatttgatgatctcaagtatcatacaatacaatgtaattattgatggtgga |
228 |
Q |
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| T |
43324418 |
gtgtttgttgaaaaggactcttctgtttgg-----actccgtataatttaatttgatgatctcaagtatcatacaatacaatgtaattattgatggtgga |
43324512 |
T |
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| Q |
229 |
acaattaatatcaccaatgaagatt---------attttgatgaatggtagatgttttcttgagctagctgttccacaaaggatttcaaaaggaaaggac |
319 |
Q |
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| T |
43324513 |
acaat----atcaccaatgaagattttaactaaaattttgatgaatggtagatgttttcttgagctagctgttccacaaaggatttcaaaaggaaaggac |
43324608 |
T |
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| Q |
320 |
cactcttattattatcaccttgtattcccattattctttcatataatgtcattaaccttctacctatttccttatcttccatcacctttgc |
410 |
Q |
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| T |
43324609 |
cactcttat---tatcaccttgtattcccattattctttcatataatgtcattaaccttctacctatttccttatcttctatcacctttgc |
43324696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 43324216 - 43324276
Alignment:
| Q |
59 |
aatatattaccaattaaactcattctgacactatcaatcaagtggtaactgaaatatatttggtt |
123 |
Q |
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| T |
43324216 |
aatatgttaccaattaaactcattctgacact----atcaagtggtaactgaaatatatttggtt |
43324276 |
T |
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