View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17277_high_43 (Length: 419)

Name: NF17277_high_43
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17277_high_43
NF17277_high_43
[»] chr5 (29 HSPs)
chr5 (21-148)||(30058391-30058518)
chr5 (21-148)||(30714843-30714970)
chr5 (299-418)||(29870769-29870892)
chr5 (299-418)||(30481915-30482038)
chr5 (82-148)||(30679043-30679109)
chr5 (303-418)||(30434409-30434528)
chr5 (299-418)||(30243769-30243894)
chr5 (299-418)||(30748226-30748349)
chr5 (299-409)||(30058880-30058985)
chr5 (78-148)||(30434070-30434138)
chr5 (307-418)||(29851892-29852005)
chr5 (356-418)||(30339922-30339984)
chr5 (368-418)||(30398670-30398720)
chr5 (355-418)||(30678630-30678693)
chr5 (334-411)||(17419295-17419373)
chr5 (78-148)||(30244163-30244233)
chr5 (239-300)||(29851735-29851796)
chr5 (239-295)||(29870646-29870702)
chr5 (299-353)||(30340004-30340059)
chr5 (202-236)||(30714756-30714790)
chr5 (239-295)||(30058757-30058813)
chr5 (239-287)||(30481792-30481840)
chr5 (204-233)||(29870580-29870609)
chr5 (203-236)||(30678954-30678987)
chr5 (103-147)||(29870506-29870550)
chr5 (203-231)||(30244072-30244100)
chr5 (203-231)||(30434201-30434229)
chr5 (304-353)||(30678707-30678758)
chr5 (299-358)||(30714546-30714606)
[»] chr4 (3 HSPs)
chr4 (364-418)||(20298144-20298198)
chr4 (234-295)||(20298317-20298378)
chr4 (204-233)||(20298405-20298434)
[»] chr7 (1 HSPs)
chr7 (368-418)||(26705919-26705969)


Alignment Details
Target: chr5 (Bit Score: 120; Significance: 3e-61; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 21 - 148
Target Start/End: Original strand, 30058391 - 30058518
Alignment:
Q  21 ggactcattgtcacatcctccactccgaacgatgtcatcttcatcattaggaacctattaatccctttatttgtcgaccccgcccttgtgtgtcaaagga 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  30058391 ggactcattgtcacatcctccactccgaacgatgtcatcttcatcattaggaacctattaatccatttatttgtcgaccccacccttgtgtgtcaaagga 30058490  T
Q  121 aatcctaaccattcaattcaatctccac 148  Q
    ||||||||||||||||||||||||||||    
T  30058491 aatcctaaccattcaattcaatctccac 30058518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 21 - 148
Target Start/End: Complemental strand, 30714970 - 30714843
Alignment:
Q  21 ggactcattgtcacatcctccactccgaacgatgtcatcttcatcattaggaacctattaatccctttatttgtcgaccccgcccttgtgtgtcaaagga 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  30714970 ggactcattgtcacatcctccactccgaacgatgtcatcttcatcattaggaacctattaatccctttatttgtcgaccccacccttgtgtgtcaaagga 30714871  T
Q  121 aatcctaaccattcaattcaatctccac 148  Q
    ||||||||||||||| ||||||||||||    
T  30714870 aatcctaaccattcagttcaatctccac 30714843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 299 - 418
Target Start/End: Original strand, 29870769 - 29870892
Alignment:
Q  299 aattgatttttgcgatggtgattgtggcagat-agggtaaacgtctctgtttcttataact---taaactctctttttggaatatgagctatcttgtccc 394  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||   ||   |||||| | || ||||||||||||||||||||||||    
T  29870769 aattgatttttgcgatgttgattgtggcagataagggtaaacgtctctgcttcttaatcctcggtaaactgtattattggaatatgagctatcttgtccc 29870868  T
Q  395 aatcctctcctgttccccctttgc 418  Q
    ||||||| ||||||||| ||||||    
T  29870869 aatcctcccctgttccctctttgc 29870892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 299 - 418
Target Start/End: Original strand, 30481915 - 30482038
Alignment:
Q  299 aattgatttttgcgatggtgattgtggcagat-agggtaaacgtctctgtttcttataact---taaactctctttttggaatatgagctatcttgtccc 394  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||   ||   |||||| | |||||||||||||||||||||||||||    
T  30481915 aattgatttttgcgatgttgattgtggcagataagggtaaacgtctctgcttcttaatcctcggtaaactgtatttttggaatatgagctatcttgtccc 30482014  T
Q  395 aatcctctcctgttccccctttgc 418  Q
    ||||||| | ||||||| ||||||    
T  30482015 aatcctcccatgttccctctttgc 30482038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 82 - 148
Target Start/End: Complemental strand, 30679109 - 30679043
Alignment:
Q  82 tccctttatttgtcgaccccgcccttgtgtgtcaaaggaaatcctaaccattcaattcaatctccac 148  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  30679109 tccctttatttgtcgaccccacccttgtgtatcaaaggaaatcctaaccattcaattcaatctccac 30679043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 303 - 418
Target Start/End: Original strand, 30434409 - 30434528
Alignment:
Q  303 gatttttgcgatggtgattgtggcagata-gggtaaacgtctctgtttcttataacttaa---actctctttttggaatatgagctatcttgtcccaatc 398  Q
    |||||||||||||||||||| |||||||| ||||||||||||||| |||||| |  | ||   ||||| || ||||||||||||||||||||||||||||    
T  30434409 gatttttgcgatggtgattgaggcagataagggtaaacgtctctgcttcttaaacatcaatcaactctattcttggaatatgagctatcttgtcccaatc 30434508  T
Q  399 ctctcctgttccccctttgc 418  Q
    ||| ||||||||| ||||||    
T  30434509 ctcccctgttccctctttgc 30434528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 299 - 418
Target Start/End: Complemental strand, 30243894 - 30243769
Alignment:
Q  299 aattgatttttgcgatggtgattgtggcagata-gggtaaacgtctctgt--ttcttataacttaaa---ctctctttttggaatatgagctatcttgtc 392  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||   |||||    || |||   | ||||||||||||||||||||||||||||    
T  30243894 aattgatttttgcgatggtgattgaggcagataagggtaaacgtctctgcccttcttcattctaaaaaatcactctttttggaatatgagctatcttgtc 30243795  T
Q  393 ccaatcctctcctgttccccctttgc 418  Q
    ||||||||| ||||||||| ||||||    
T  30243794 ccaatcctcccctgttccctctttgc 30243769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 299 - 418
Target Start/End: Original strand, 30748226 - 30748349
Alignment:
Q  299 aattgatttttgcgatggtgattgtggcagata-gggtaaacgtctctgtttcttataact---taaactctctttttggaatatgagctatcttgtccc 394  Q
    |||||| ||||||||| ||||||| |||||||| ||||||||||||||| ||||||   ||   |||||  | |||||||||||||||||||||||||||    
T  30748226 aattgaattttgcgattgtgattgaggcagataagggtaaacgtctctgcttcttaatcctctgtaaacagtatttttggaatatgagctatcttgtccc 30748325  T
Q  395 aatcctctcctgttccccctttgc 418  Q
    ||||||| | ||||||| ||||||    
T  30748326 aatcctcccatgttccctctttgc 30748349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 299 - 409
Target Start/End: Original strand, 30058880 - 30058985
Alignment:
Q  299 aattgatttttgcgatggtgattgtggcagata-gggtaaacgtctctgtttcttataacttaaactctctttttggaatatgagctatcttgtcccaat 397  Q
    ||||||||||||||||||| | || |||||||| ||||||||||||||| ||||||      ||||| | ||||||||||||||| ||||||||||||||    
T  30058880 aattgatttttgcgatggttaatgaggcagataagggtaaacgtctctgcttctta------aaactgtatttttggaatatgagatatcttgtcccaat 30058973  T
Q  398 cctctcctgttc 409  Q
    |||| |||||||    
T  30058974 cctcccctgttc 30058985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 78 - 148
Target Start/End: Original strand, 30434070 - 30434138
Alignment:
Q  78 ttaatccctttatttgtcgaccccgcccttgtgtgtcaaaggaaatcctaaccattcaattcaatctccac 148  Q
    ||||||||||||||||| |||||| ||||||||  ||||||| ||||||||||||||||||||||||||||    
T  30434070 ttaatccctttatttgtggaccccacccttgtg--tcaaaggcaatcctaaccattcaattcaatctccac 30434138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 307 - 418
Target Start/End: Original strand, 29851892 - 29852005
Alignment:
Q  307 tttgcgatggtgattgtggc-agata-gggtaaacgtctctgtttcttataacttaaactctctttttggaatatgagctatcttgtcccaatcctctcc 404  Q
    |||||||||||||||| ||| ||||| ||||||| ||||||| ||||||  | ||||||| | | ||||||||||||| |||||||||||||||||| |     
T  29851892 tttgcgatggtgattgaggccagataagggtaaatgtctctgcttcttaatagttaaactgtatatttggaatatgagatatcttgtcccaatcctcaca 29851991  T
Q  405 tgttccccctttgc 418  Q
    ||||||| ||||||    
T  29851992 tgttcccactttgc 29852005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 356 - 418
Target Start/End: Complemental strand, 30339984 - 30339922
Alignment:
Q  356 acttaaactctctttttggaatatgagctatcttgtcccaatcctctcctgttccccctttgc 418  Q
    ||||||||| | | |||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  30339984 acttaaactgtatatttggaatatgagctatcttgtcccaatcctcccctgttccctctttgc 30339922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 368 - 418
Target Start/End: Original strand, 30398670 - 30398720
Alignment:
Q  368 tttttggaatatgagctatcttgtcccaatcctctcctgttccccctttgc 418  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  30398670 tttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgc 30398720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 355 - 418
Target Start/End: Complemental strand, 30678693 - 30678630
Alignment:
Q  355 aacttaaactctctttttggaatatgagctatcttgtcccaatcctctcctgttccccctttgc 418  Q
    |||||||||| | |||||||||||||||||||||||||||||||||| ||  ||||| ||||||    
T  30678693 aacttaaactgtatttttggaatatgagctatcttgtcccaatcctcccccattccctctttgc 30678630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 334 - 411
Target Start/End: Complemental strand, 17419373 - 17419295
Alignment:
Q  334 gtaaacgtctct-gtttcttataacttaaactctctttttggaatatgagctatcttgtcccaatcctctcctgttccc 411  Q
    |||||||||||| | ||||||  |||| |||| | |||||||||||||||||||||||||||||||||| || ||||||    
T  17419373 gtaaacgtctcttgcttcttaatactttaactttatttttggaatatgagctatcttgtcccaatcctccccggttccc 17419295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 78 - 148
Target Start/End: Complemental strand, 30244233 - 30244163
Alignment:
Q  78 ttaatccctttatttgtcgaccccgcccttgtgtgtcaaaggaaatcctaaccattcaattcaatctccac 148  Q
    ||||||| ||||| ||||||||||  || |||||||| || | ||||||||||||||||||||||||||||    
T  30244233 ttaatccatttatctgtcgaccccatccctgtgtgtcgaaagcaatcctaaccattcaattcaatctccac 30244163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 300
Target Start/End: Original strand, 29851735 - 29851796
Alignment:
Q  239 atgtactctggatctctttctgaggaatgggttccaaagaagtcaacaatgacaatatataa 300  Q
    |||||| ||||||||||| ||  |||||||||| |||||||||||||||||| |||||||||    
T  29851735 atgtaccctggatctcttcctacggaatgggttacaaagaagtcaacaatgagaatatataa 29851796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 239 - 295
Target Start/End: Original strand, 29870646 - 29870702
Alignment:
Q  239 atgtactctggatctctttctgaggaatgggttccaaagaagtcaacaatgacaata 295  Q
    |||||||||||||||||| ||| ||||||||||||||||| ||| ||||||| ||||    
T  29870646 atgtactctggatctcttcctgcggaatgggttccaaagatgtcgacaatgagaata 29870702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 299 - 353
Target Start/End: Complemental strand, 30340059 - 30340004
Alignment:
Q  299 aattgatttttgcgatggtgattgtggcagat-agggtaaacgtctctgtttctta 353  Q
    |||||| ||||||||||||||||| ||||||| |||||||||||||||| ||||||    
T  30340059 aattgaattttgcgatggtgattgaggcagataagggtaaacgtctctgcttctta 30340004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 202 - 236
Target Start/End: Complemental strand, 30714790 - 30714756
Alignment:
Q  202 ttatgatgaagaaaattacctgaattagaacaatt 236  Q
    |||||||||||||||||||||||||||||||||||    
T  30714790 ttatgatgaagaaaattacctgaattagaacaatt 30714756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 295
Target Start/End: Original strand, 30058757 - 30058813
Alignment:
Q  239 atgtactctggatctctttctgaggaatgggttccaaagaagtcaacaatgacaata 295  Q
    |||||||||||||||||| |||  |||||||||||||||| ||| ||||||| ||||    
T  30058757 atgtactctggatctcttcctgcagaatgggttccaaagatgtcgacaatgagaata 30058813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 287
Target Start/End: Original strand, 30481792 - 30481840
Alignment:
Q  239 atgtactctggatctctttctgaggaatgggttccaaagaagtcaacaa 287  Q
    ||||| |||||||||||| ||| ||||||||||||||| ||||||||||    
T  30481792 atgtagtctggatctcttcctgcggaatgggttccaaataagtcaacaa 30481840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 233
Target Start/End: Original strand, 29870580 - 29870609
Alignment:
Q  204 atgatgaagaaaattacctgaattagaaca 233  Q
    ||||||||||||||||||||||||||||||    
T  29870580 atgatgaagaaaattacctgaattagaaca 29870609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 236
Target Start/End: Complemental strand, 30678987 - 30678954
Alignment:
Q  203 tatgatgaagaaaattacctgaattagaacaatt 236  Q
    ||||||||||||||||||| ||||||||||||||    
T  30678987 tatgatgaagaaaattaccagaattagaacaatt 30678954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 29870506 - 29870550
Alignment:
Q  103 cccttgtgtgtcaaaggaaatcctaaccattcaattcaatctcca 147  Q
    |||||||||||  |||| |||||||||||||||| ||||||||||    
T  29870506 cccttgtgtgttgaaggcaatcctaaccattcaaatcaatctcca 29870550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 231
Target Start/End: Complemental strand, 30244100 - 30244072
Alignment:
Q  203 tatgatgaagaaaattacctgaattagaa 231  Q
    |||||||||||||||||||||||||||||    
T  30244100 tatgatgaagaaaattacctgaattagaa 30244072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 231
Target Start/End: Original strand, 30434201 - 30434229
Alignment:
Q  203 tatgatgaagaaaattacctgaattagaa 231  Q
    |||||||||||||||||||||||||||||    
T  30434201 tatgatgaagaaaattacctgaattagaa 30434229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 353
Target Start/End: Complemental strand, 30678758 - 30678707
Alignment:
Q  304 atttttgcgatggtgattgtggcagat--agggtaaacgtctctgtttctta 353  Q
    ||||||||||||||||||  |||||||  |||||||||||||||| ||||||    
T  30678758 atttttgcgatggtgattaaggcagataaagggtaaacgtctctgcttctta 30678707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 358
Target Start/End: Complemental strand, 30714606 - 30714546
Alignment:
Q  299 aattgatttttgcgatggtgattgtggcagata-gggtaaacgtctctgtttcttataact 358  Q
    |||||||||||| |||||  | || |||||||| ||||||||||||||| |||||||||||    
T  30714606 aattgatttttgtgatggctaatgaggcagataagggtaaacgtctctgcttcttataact 30714546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 364 - 418
Target Start/End: Complemental strand, 20298198 - 20298144
Alignment:
Q  364 tctctttttggaatatgagctatcttgtcccaatcctctcctgttccccctttgc 418  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  20298198 tctctttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgc 20298144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 234 - 295
Target Start/End: Complemental strand, 20298378 - 20298317
Alignment:
Q  234 attttatgtactctggatctctttctgaggaatgggttccaaagaagtcaacaatgacaata 295  Q
    |||| |||||||||||||||||||||   ||| |||||||||||||||||||| ||| ||||    
T  20298378 atttcatgtactctggatctctttctacagaacgggttccaaagaagtcaacattgagaata 20298317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 233
Target Start/End: Complemental strand, 20298434 - 20298405
Alignment:
Q  204 atgatgaagaaaattacctgaattagaaca 233  Q
    ||||||||||||||||||||||||||||||    
T  20298434 atgatgaagaaaattacctgaattagaaca 20298405  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 368 - 418
Target Start/End: Original strand, 26705919 - 26705969
Alignment:
Q  368 tttttggaatatgagctatcttgtcccaatcctctcctgttccccctttgc 418  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  26705919 tttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgc 26705969  T

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