View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_high_45 (Length: 413)
Name: NF17277_high_45
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_high_45 |
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Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 18 - 406
Target Start/End: Original strand, 11200047 - 11200444
Alignment:
| Q |
18 |
catttcgttagtcaaatttgtacaccctttatcataagtctatgattaaagtttcaaaatatatatcatatacatgtgatgcatcggttttgctgaacaa |
117 |
Q |
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| T |
11200047 |
catttcgttagtcaaatttgtacagcctttatcataagtctatgagtaaagtttcaaaatatatatcatatacatgtgatgcatcggttttgctgaacaa |
11200146 |
T |
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| Q |
118 |
cacagcaacaatcgtaagcgaacaacaagcttttccaaatatcaactccctaagagatttggatgttgt---------gaacaaaatcaagacaaacttt |
208 |
Q |
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| T |
11200147 |
cacagcaacaatcgtaagcgaacaacaagcttttccaaatatcaactccataagaggtttggatgttgtgattcttgtgaacaaaatcaagacaaacttt |
11200246 |
T |
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| Q |
209 |
ggctaatcaaaaccttccaacactactgatctagttgtactctctggtataatgtatgtgtttgtgttgcaattatttatgcaaaatagaaaataatgaa |
308 |
Q |
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| T |
11200247 |
ggctaatcaaaaccttccaacactactgatctagttgtactctctagtataatgtatgtgtttgtgttgcaattatttatgcaaaatagaaattaatgaa |
11200346 |
T |
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| Q |
309 |
tcaaaatataattttggaattaaatcatttacaatttagcatcttaattaactccnnnnnnnttagcatcttcgttaatcttggctgacttacaaata |
406 |
Q |
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| T |
11200347 |
tcaaaatataattttggaattaaatcatgtacaatttagcatcttaattaactccaaaaaaattagcatcttcgttaatcttggctgacttaaaaata |
11200444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 91 - 186
Target Start/End: Original strand, 11155568 - 11155663
Alignment:
| Q |
91 |
atgtgatgcatcggttttgctgaacaacacagcaacaatcgtaagcgaacaacaagcttttccaaatatcaactccctaagagatttggatgttgt |
186 |
Q |
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| T |
11155568 |
atgtgatgcctcggttttgttgaacaatactgctacgatcgtaagcgaacaacaagcttttccaaataacaactctttaagaggtttggatgttgt |
11155663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 95 - 189
Target Start/End: Complemental strand, 10794183 - 10794089
Alignment:
| Q |
95 |
gatgcatcggttttgctgaacaacacagcaacaatcgtaagcgaacaacaagcttttccaaatatcaactccctaagagatttggatgttgtgaa |
189 |
Q |
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| T |
10794183 |
gatgcatccattttgctgaacaacactgctactatcgtgagcgaactacaagctctcccaaatatcaactccataagaggtttgcaagttgtgaa |
10794089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 92 - 201
Target Start/End: Original strand, 11110101 - 11110210
Alignment:
| Q |
92 |
tgtgatgcatcggttttgctgaacaacacagcaacaatcgtaagcgaacaacaagcttttccaaatatcaactccctaagagatttggatgttgtgaaca |
191 |
Q |
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||||||||||| |||||| |||| ||||| ||||| || || || |||||| | ||||||||||||||||||||| |||||| ||||||||| | || |
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| T |
11110101 |
tgtgatgcatcagttttgttgaataacaccgcaactattgtgagtgaacaagatgcttttccaaatatcaactccttaagaggattggatgttatcaatc |
11110200 |
T |
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| Q |
192 |
aaatcaagac |
201 |
Q |
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| T |
11110201 |
aaatcaagac |
11110210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 198
Target Start/End: Original strand, 11136953 - 11137059
Alignment:
| Q |
92 |
tgtgatgcatcggttttgctgaacaacacagcaacaatcgtaagcgaacaacaagcttttccaaatatcaactccctaagagatttggatgttgtgaaca |
191 |
Q |
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||||||||||| ||||| ||||||| || | || || || || |||||| ||||||| |||||||||||||| ||| ||| ||||||||||||||| |
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| T |
11136953 |
tgtgatgcatcagttttattgaacaaaactgataccattgtgagtgaacaagaagctttcccaaatatcaactctctacgaggtttggatgttgtgaatc |
11137052 |
T |
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| Q |
192 |
aaatcaa |
198 |
Q |
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| T |
11137053 |
aaatcaa |
11137059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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