View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_high_47 (Length: 409)
Name: NF17277_high_47
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_high_47 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 126 - 398
Target Start/End: Original strand, 43221862 - 43222139
Alignment:
| Q |
126 |
tttctgcttgtgccctatttaggttagcagctcaattattttttagagtaactggttattttactatgcagagaagaggtgaatgtgaaaaacaaggcgt |
225 |
Q |
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| T |
43221862 |
tttctgcctgtgccctatttaggttagcagctcaattattttttagagtaactggttattttactatgcagagaagaggtgaatgtgaaaaacaaggcgt |
43221961 |
T |
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| Q |
226 |
tgagtgcaagcaagtaaatggtggtaatgaagataacgatttggagagtgaagactatatctacaccaactcagtgttaccctagatcaaacacactgct |
325 |
Q |
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| T |
43221962 |
tgagtgcaagcaagtaaatggtggtaatgaagataacgatttggagagtgaagactatatctacaccaactcagtgttaccctagatgaaacacactgct |
43222061 |
T |
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| Q |
326 |
tgcatgtattatgaagtaatttattccttactat-----ttcctctactgaatgatgatgtattttagctgtgatttt |
398 |
Q |
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| T |
43222062 |
tgcatgtattatgaagtaatttattccttactatttcaattcctctactgaatgatgatgtattttagttgtgatttt |
43222139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 43221754 - 43221794
Alignment:
| Q |
18 |
gatgctggctctggaagtagttctgtcaatgttgttgtgag |
58 |
Q |
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| T |
43221754 |
gatgctggctctggaagtagttctgtcaatgttgttgtgag |
43221794 |
T |
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