View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_high_49 (Length: 405)
Name: NF17277_high_49
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_high_49 |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 15 - 391
Target Start/End: Complemental strand, 26374663 - 26374290
Alignment:
| Q |
15 |
caaaggagactattgaaatgaaaatcaatttattcaaactaatgttgcatctcccacaactgctcaaacctcatgtctctctagtttggtttgattgaat |
114 |
Q |
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| T |
26374663 |
caaaggagattattgaaatgaaaatcaatttattcaaactaatgttgcatctcccacaactgctcaaaccgcatgtctctctagtttggtttgattgaac |
26374564 |
T |
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| Q |
115 |
tggaaccagcgacagaatctgcacaaaataaaaaggaaacatgttttaaaacgcaaaaatgtttgtaactgaattgtgtatatatcatatctcatttctg |
214 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
26374563 |
tggaaccagcgacagaatctgcacaaaataaataggaaacatgttttaaaacgcaaaaatgtttgtaactgaaatgtgtatatatcatatctcatttctg |
26374464 |
T |
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| Q |
215 |
cactctaccatataacactaaaatttgatcaagaaaacaatnnnnnnnnnnncattatttcttttacaaataattccaagtaaatgacataataggaggt |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26374463 |
cactctaccatataacactaaaatttgatcaagaaaacaat--aaaaaaaaacattatttcttttacaaataattccaagtaaatgacataataggaggt |
26374366 |
T |
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| Q |
315 |
aattttgtaattgaaattaaaaacaagaaattaannnnnnnnncctttgtagattgccttcaagtttttgtctatac |
391 |
Q |
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|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
26374365 |
aaatttgtaattgaaattaaaaacaagaaattaa-ttttttttcctttgtagattgccttcaagtttttgtctatac |
26374290 |
T |
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