View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_high_5 (Length: 715)
Name: NF17277_high_5
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-100; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 436 - 692
Target Start/End: Complemental strand, 25493560 - 25493306
Alignment:
| Q |
436 |
gtttaaatttaccaaaaaggacatcaatcatacttgaatttcatagaacttaccatttcaggatcttactggcatatgcagcctttgcattaaaatctat |
535 |
Q |
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| T |
25493560 |
gtttaaatctacctaaaagaacatcaatcatattagaatctcatagaacttaccatttcaggatcttactggtatgtgcaacctttgcattaaaatctat |
25493461 |
T |
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| Q |
536 |
cgaaatgccaccatttctaaggaaattacgagagttgcagccattaattcagagtcaatgtctcgaggagaataacaccgaagtgcaggcccagatcgag |
635 |
Q |
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| T |
25493460 |
cgaaatgccaccatttctaaggaaactgcgag--ttgcatccattaattcagagtcaatgtctcgaggagaataacatcgaagtgcaggcccagatcgag |
25493363 |
T |
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| Q |
636 |
taccacatactaaagcaaaatgaatgagaggctctgggaaagagagggccacctaac |
692 |
Q |
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| T |
25493362 |
taccacatactaaagcaaagtgaatgagaggctctggaaaagagagggccacctaac |
25493306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 12 - 296
Target Start/End: Complemental strand, 25494346 - 25494062
Alignment:
| Q |
12 |
tgagatgaatctaagtagattgacacatgcttcataacctctacctcattcttgccaaaatctacactgaacctgaatattcacaacaaaaaatgttaga |
111 |
Q |
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| T |
25494346 |
tgagatgaatctaagtagattgacacatgcttcataacttctacctcattcttgccaaaatctacactgaacctgaatattcataacaaaaaatgttaga |
25494247 |
T |
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| Q |
112 |
attcccaaaaattgtcattttttgtcttaatcttttaattttaaagaaaagagac----gtaatctggcgtttgatcagagataaataaagtttgctcag |
207 |
Q |
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| T |
25494246 |
attcccaaaaattgtcattttttgtcttaatcctttagttttagagaaaagagactctgataatccgaaatttgatcggacacaaataaagtttgcttaa |
25494147 |
T |
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| Q |
208 |
ccaaaaatcaaactcaaattctctcgagtagtttgtccttaactgaagttcaataaccacttcattgaacccaacattaaatacaccat |
296 |
Q |
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| T |
25494146 |
ccaaaattcaaactcaaatcctctcgagtagttcgtccttaactgaaggtcaataatcac----ttgaacccaatattaaatacaccat |
25494062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 28225895 - 28225970
Alignment:
| Q |
12 |
tgagatgaatctaagtagattgacacatgcttcataacctctacctcattcttgccaaaatctacactgaacctga |
87 |
Q |
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| T |
28225895 |
tgagatgaatctaagtagattgacacatgcttcataacctctacctcattcttgccaaaatctacactgaacctga |
28225970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 480 - 690
Target Start/End: Complemental strand, 33184643 - 33184435
Alignment:
| Q |
480 |
agaacttaccatttcaggatcttactggcatatgcagcctttgcattaaaatctatcgaaatgccaccatttctaaggaaattacgagagttgcagccat |
579 |
Q |
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|||||| ||||||| || ||||| ||| ||||||||| |||||| | ||||| ||| || || ||| |||| ||||||||||||| ||||| ||| |
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| T |
33184643 |
agaactaaccatttaagaatcttgctgacatatgcagtctttgccgtcaaatcaatcacaagacctccacttcttaggaaattacgag--ttgcatccaa |
33184546 |
T |
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| Q |
580 |
taattcagagtcaatgtctcgaggagaataacaccgaagtgcaggcccagatcgagtaccacatactaaagcaaaatgaatgagaggctctgggaaagag |
679 |
Q |
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|||||| |||||| | || ||||||||| || ||||| |||||||||||||| || |||||||| |||||||||||||| | |||||| ||| ||| | |
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| T |
33184545 |
taattcttcgtcaatttttccaggagaatagcatcgaagggcaggcccagatcgggtgccacataccaaagcaaaatgaatcataggctcggggtaaggg |
33184446 |
T |
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| Q |
680 |
agggccaccta |
690 |
Q |
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|| || ||||| |
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| T |
33184445 |
agtgcaaccta |
33184435 |
T |
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