View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17277_high_52 (Length: 396)

Name: NF17277_high_52
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17277_high_52
NF17277_high_52
[»] chr4 (3 HSPs)
chr4 (61-184)||(167262-167384)
chr4 (300-383)||(167481-167564)
chr4 (4-51)||(2306647-2306694)
[»] chr7 (1 HSPs)
chr7 (4-53)||(13332785-13332834)
[»] chr8 (2 HSPs)
chr8 (4-53)||(21538220-21538269)
chr8 (4-53)||(37633313-37633362)
[»] chr1 (1 HSPs)
chr1 (6-53)||(35840827-35840875)


Alignment Details
Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 61 - 184
Target Start/End: Original strand, 167262 - 167384
Alignment:
Q  61 atcaagtgattaatgactaaatattcaccacactgagattaataagtggagaatgaattcgagattgcacatacaaattatttgtaatgtctctaccaat 160  Q
    ||||||||||||||||||||||||||||| |||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  167262 atcaagtgattaatgactaaatattcaccgcaca-aggttaataagtggagaatgaattcgagattgcacatacaaattatttgtaatgtctctatcaat 167360  T
Q  161 caagttatgttcactaagacaatg 184  Q
    | |||||||||||||| |||||||    
T  167361 cgagttatgttcactaggacaatg 167384  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 300 - 383
Target Start/End: Original strand, 167481 - 167564
Alignment:
Q  300 atgacattttatgcgtcactgaatggataatattcttcataatataacnnnnnnnnttatgctattactttttccaccctatgc 383  Q
    |||||||||||||   ||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||    
T  167481 atgacattttatggaccactgaatggataatattcttcataatataacaaaaaaaattatgctattactttttccaccctatgc 167564  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 2306694 - 2306647
Alignment:
Q  4 tgtaattcgtatttcccgtagattcagtttcgtgggaaatggcatttc 51  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||    
T  2306694 tgtaattcgtattttccgtggattcagtttcgtgggaaatggcatttc 2306647  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 13332785 - 13332834
Alignment:
Q  4 tgtaattcgtatttcccgtagattcagtttcgtgggaaatggcatttccc 53  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  13332785 tgtaattcgtattttccgtggattcagtttcgtgggaaatggcatttccc 13332834  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 21538220 - 21538269
Alignment:
Q  4 tgtaattcgtatttcccgtagattcagtttcgtgggaaatggcatttccc 53  Q
    |||||||||||||| |||| |||||||||||||||||||||| |||||||    
T  21538220 tgtaattcgtattttccgtggattcagtttcgtgggaaatggtatttccc 21538269  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 37633362 - 37633313
Alignment:
Q  4 tgtaattcgtatttcccgtagattcagtttcgtgggaaatggcatttccc 53  Q
    |||||||||||||||||||  ||||| |||||| ||| ||||||||||||    
T  37633362 tgtaattcgtatttcccgtgaattcactttcgtaggatatggcatttccc 37633313  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 53
Target Start/End: Original strand, 35840827 - 35840875
Alignment:
Q  6 taattcgtatttcccgtagattcagtttcgtgggaaat-ggcatttccc 53  Q
    |||||||||||| |||| |||||||||||||||||||| ||||||||||    
T  35840827 taattcgtattttccgtggattcagtttcgtgggaaatgggcatttccc 35840875  T

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