View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_high_53 (Length: 396)
Name: NF17277_high_53
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_high_53 |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 16 - 389
Target Start/End: Complemental strand, 39290535 - 39290162
Alignment:
| Q |
16 |
aaattaccaataagaaaattgtgttttgatactagtcattatgctcttctttatttaattaacacttggaactctcaatgaaccagtgttacaaaactag |
115 |
Q |
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| T |
39290535 |
aaattaccaataagaaaattgtgttttgatactagtcattatgctcttctttatttaattaacacttggaactctcaatgaaccagtgttacaaaactag |
39290436 |
T |
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| Q |
116 |
tnnnnnnnnnnnnnnnnnnnntaagtttctactataggtaaacaaaagtaacttaataaatttttacagtgtttcaagcaaacagagaaggagtaacaaa |
215 |
Q |
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| T |
39290435 |
ttactactactactactactataagtttctactataggtaaacaaaagtaactaaataaatttttacagtgtttcaagcaaacagagaaggagtaacaaa |
39290336 |
T |
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| Q |
216 |
ttacttgccttaaaattttgtgtaattttgagccattcaagagtcccaaattggaccaaatgcaggaatcttagccttgttacaagctctaacaacatct |
315 |
Q |
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| T |
39290335 |
ttacttgccttaaaattttgtgtaattttgagccattcaagagtcccaaattggaccaaatgcaggaatcttagccttgttacaagctctaacaacatct |
39290236 |
T |
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| Q |
316 |
ctactaccttcaggattacttgtaacaataacaacttcaacattccaattaatagcagcattcacattcatctc |
389 |
Q |
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| T |
39290235 |
ctactaccttcaggattacttgtgacaataacaacttcaacattccaattaatagcagcattcacactcatctc |
39290162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 207 - 389
Target Start/End: Complemental strand, 39297221 - 39297042
Alignment:
| Q |
207 |
agtaacaaattacttgccttaaaattttgtgtaattttgagccattcaagagtcccaaattggaccaaatgcaggaatcttagccttgttacaagctcta |
306 |
Q |
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| T |
39297221 |
agtaacaaattacttgccttacaagtttttgt---ttagaacctttcaagagtcccaaattggaccaaaagcaggaattttagccttgttacaagctcta |
39297125 |
T |
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| Q |
307 |
acaacatctctactaccttcaggattacttgtaacaataacaacttcaacattccaattaatagcagcattcacattcatctc |
389 |
Q |
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| T |
39297124 |
acaacatctctactaccttcaggattacttgtaacaataacaacttcaacattccaattattagcagcattcacactcatctc |
39297042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 39297389 - 39297304
Alignment:
| Q |
17 |
aattaccaataagaaaattgtgttttgatactagtcattatgctcttctttatttaattaacacttggaactctcaatgaaccagtgttacaa |
109 |
Q |
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|||||| |||||||||| |||||| ||||||||| || ||| ||||||||| |||||||||||||||||| ||| ||||||||||||| |
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| T |
39297389 |
aattacaaataagaaaactgtgttatgatactagccagtatactcttcttt-----attaacacttggaactct--atgcaccagtgttacaa |
39297304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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