View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_high_56 (Length: 395)
Name: NF17277_high_56
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_high_56 |
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Alignment Details
Target: chr8 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 20 - 380
Target Start/End: Complemental strand, 42120249 - 42119889
Alignment:
| Q |
20 |
tgatacactaagaagttcaacctttgctttttactagggatctgtgttttctcaccaatcaggatgctttactggagaaatataatactgcagacatatt |
119 |
Q |
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| T |
42120249 |
tgatacactaagaagttcaacctttgctttttactagggatctgtgttttctcaccaatcaggatgctttactggagaaatataatactacagacatatt |
42120150 |
T |
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| Q |
120 |
cagtgaactcgaacttcaagaaattcgccgacctaaaagctctataatggtaacttgacatgtttggtgtttggtttgagaaaaagttttaccaaacaga |
219 |
Q |
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| T |
42120149 |
cagtgaactcgaacttcaagaaattcgccgacctaaaagctctataatggtaacttgacatgtttggtgtttggtttgagaaaaagttttaccaaacaga |
42120050 |
T |
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| Q |
220 |
ggaaaacttactaattctgacttggtgctgtgactatgaacaggttattctaagaggcttcttcagaaatgagcaaaaattcaccattatttagtgttga |
319 |
Q |
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| T |
42120049 |
ggaaaacttactaattctgacttggtgctgtgactatgaacaggttattctaagaggcttcttcagaaatgagcaaaaattcaccattatttagtgttga |
42119950 |
T |
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| Q |
320 |
tcacattacatgtctctatctcattatgctacatatgtatatacgtttttctttatcccta |
380 |
Q |
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| T |
42119949 |
tcacattacatgtctctatctcattatgctacatatgtatatacgtctttctttatcccta |
42119889 |
T |
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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 41864540 - 41864599
Alignment:
| Q |
78 |
tcaggatgctttactggagaaatataatactgcagacatattcagtgaactcgaacttca |
137 |
Q |
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| T |
41864540 |
tcaggatgcattactggagaaatatagtactacagagatattcagtgagctagaacttca |
41864599 |
T |
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