View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_high_59 (Length: 387)
Name: NF17277_high_59
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_high_59 |
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Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 9 - 370
Target Start/End: Original strand, 37833756 - 37834114
Alignment:
| Q |
9 |
gagatgaaatcagttctaactgaggcatcaaactcatttgatttgaggttttgaaagtaatttagtggagggatgtggtcagattcaatgaggaaaagtg |
108 |
Q |
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| T |
37833756 |
gagatgaaatcagttctaactgaggcatcaaactcatttgatttgaggttttgaaagtaatttagtggagggatgtggtcagattcaatgaggaaaagtg |
37833855 |
T |
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| Q |
109 |
aagaaacatcttgagaattaggaaggtcatggaaatattcaagagggttttcaaggtcaaactccatggatgtgtggagaagaagatgttagtgaagttg |
208 |
Q |
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| T |
37833856 |
aagaaacatcttgagaattaggaaggtcatggaaatattcaagagggttttcaaggtcaaactccatggatgtgtgg---agaagatgttagtgatgttg |
37833952 |
T |
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| Q |
209 |
agaagtaaggaagatgataagcattgttatagggagagaaaagagaagtgataaagaaaaggcaatgagagagttttcagcttttcatgagaatcagatg |
308 |
Q |
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| T |
37833953 |
agaagtaaggaagatgataagcattgttatagggagagaaaagagaagtgataaagaaaaggcaatgagagagttttcagcttttcatgagaatcagatg |
37834052 |
T |
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| Q |
309 |
aaagctacgtagggggttgagttgttttagctttgctactatactagttgctagctactcat |
370 |
Q |
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| T |
37834053 |
aaagctacgtagggggttgagttgttttagctttgctactacactagttgctagctactcat |
37834114 |
T |
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