View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_high_60 (Length: 386)
Name: NF17277_high_60
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_high_60 |
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Alignment Details
Target: chr7 (Bit Score: 352; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 34645077 - 34644714
Alignment:
| Q |
1 |
ttattggtatcaatagtccataagtatactggtaaggaaaataattggcttcctgatagaaaccttaataggggtagattggactactactattatctta |
100 |
Q |
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| T |
34645077 |
ttattggtatcaatagtccataagtatactggtaaggaaaataattggcttcctgatagaaaccttaataggggtagattggactactactattatctta |
34644978 |
T |
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| Q |
101 |
ttagtggcattcaagtaataaatttcatttattatatagtatgtgcttggttttacacttacaagccaatgggtgaagtttgtgaaaggagcaaggaaga |
200 |
Q |
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| T |
34644977 |
ttagtggcattcaagtaataaatttaatttattatatagtatgtgcttggttttacacttacaagccaatgggtgaagtttgtgaaaggagcaaggaaga |
34644878 |
T |
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| Q |
201 |
agatttggaacaagcaagtgcaaacatatcaattgagaatttaaaagatggtaaggaggaagaaaagaaagggtttactaaagatgaatgaaattatggt |
300 |
Q |
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| T |
34644877 |
agatttggaacaagcaagtgcaaacatatcaattgagaatttaaaagatggtaaggaggaagaaaagaaagggtttactaaagatgaatgaaattatggt |
34644778 |
T |
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| Q |
301 |
gtggttgatattattcactataaataagcttggttaaactctagtgaatggttttagcttttgt |
364 |
Q |
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| T |
34644777 |
gtggttgatattattcagtataaataagcttggttaaactctagtgaatgtttttagcttttgt |
34644714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 34664777 - 34664611
Alignment:
| Q |
1 |
ttattggtatcaatagtccataagtatactggtaaggaaaataattggcttcctgatagaaaccttaataggggtagattggactactactattatctta |
100 |
Q |
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| T |
34664777 |
ttattggtaacacttgtgcataagtatactggtaaggagaggaattggttacctgataggaacctcaataggggaagattggagtactattattttcttg |
34664678 |
T |
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| Q |
101 |
ttagtggcattcaagtaataaatttcatttattatatagtatgtgcttggttttacacttacaagcc |
167 |
Q |
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| T |
34664677 |
tttgtgggattcaagtcataaatttcatttattatgtaatatgtgcatggatttacaattacaagcc |
34664611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 14 - 214
Target Start/End: Complemental strand, 34658091 - 34657891
Alignment:
| Q |
14 |
tagtccataagtatactggtaaggaaaataattggcttcctgatagaaaccttaataggggtagattggactactactattatcttattagtggcattca |
113 |
Q |
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| T |
34658091 |
tagtgcataaatatagtggcaaggaaaataattggttacctgataggaaccttaataggggtaaattggaatattattattatcttgttagtggtgttca |
34657992 |
T |
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| Q |
114 |
agtaataaatttcatttattatatagtatgtgcttggttttacacttacaagccaatgggtgaagtttgtgaaaggagcaaggaagaagatttggaacaa |
213 |
Q |
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| T |
34657991 |
agttctaaatctcatttattttggaatttgtttttggttttacacttacaagcccttggaagaaattgctgaaattaacaaggaagaagatttggaacaa |
34657892 |
T |
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| Q |
214 |
g |
214 |
Q |
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| T |
34657891 |
g |
34657891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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