View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_high_61 (Length: 385)
Name: NF17277_high_61
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_high_61 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 149 - 375
Target Start/End: Complemental strand, 30965534 - 30965308
Alignment:
| Q |
149 |
attgcctctctaatttttctttcatcccttttctccttcatcctcaagcgctgctcacggccctctccaaagtaaaattgatacattctatgaacattat |
248 |
Q |
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| T |
30965534 |
attgtctctctaatttttctttcatcccttttctccttcatcctcaagcgctgctcacggccctctccaaagtaaaattgatacattctatgaacattat |
30965435 |
T |
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| Q |
249 |
aaaatgtttgaattatctccacaatgatatggataataatgatgacaaaaaccacataagaaccatatttaatcttttctattagatagaccactgaatc |
348 |
Q |
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||||||||||||||||| |||||||| | | ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||| |
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| T |
30965434 |
aaaatgtttgaattatccccacaatggttttgataataatgatgacaaaaactacataaaaaccatatttaatcttttctattagatagagcactgaatc |
30965335 |
T |
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| Q |
349 |
atgaccagtagtaagtccaaggttctt |
375 |
Q |
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| T |
30965334 |
atgaccagtagtaagtccaaggttctt |
30965308 |
T |
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