View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17277_high_63 (Length: 379)

Name: NF17277_high_63
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17277_high_63
NF17277_high_63
[»] chr4 (3 HSPs)
chr4 (80-358)||(166948-167225)
chr4 (251-363)||(106816-106928)
chr4 (1-76)||(2306751-2306827)
[»] scaffold0013 (1 HSPs)
scaffold0013 (255-361)||(88553-88659)
[»] chr7 (2 HSPs)
chr7 (251-363)||(13055239-13055351)
chr7 (1-70)||(13332658-13332728)
[»] chr8 (11 HSPs)
chr8 (1-79)||(21538084-21538163)
chr8 (275-361)||(5718267-5718353)
chr8 (272-361)||(5656649-5656738)
chr8 (275-361)||(5686120-5686206)
chr8 (266-359)||(5602663-5602756)
chr8 (266-359)||(5602925-5603018)
chr8 (266-359)||(5632352-5632445)
chr8 (266-359)||(5638186-5638279)
chr8 (266-359)||(5651384-5651477)
chr8 (266-346)||(5602090-5602170)
chr8 (266-346)||(5638450-5638530)
[»] chr1 (2 HSPs)
chr1 (25-81)||(35840678-35840734)
chr1 (1-81)||(41570406-41570487)
[»] chr3 (1 HSPs)
chr3 (289-363)||(12134943-12135017)


Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 80 - 358
Target Start/End: Complemental strand, 167225 - 166948
Alignment:
Q  80 atgtatatatcccaacgccaaaattggccaacttatttcnnnnnnnnnncttccggttatttgaactcattccttttggaaatgaaaacgtgcaagaaca 179  Q
    |||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  167225 atgtatatatcccaacgccaaaattggccaacttatttctttcttttttcttccggttatttgaactcattccttttggaaatgaaaacgtgcaagaaca 167126  T
Q  180 catccagcataagaaaaattaacttatcaacttgattggttttatttgcctgattctttaaagggtagtcacagtggaaggcaatggaacctgtctacga 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  167125 catccagcataagaaaaattaacttatcaacttgattggttttatttgcctgatt-tttaaagtgtagtcacagtggaaggcaatggaacctgtctacga 167027  T
Q  280 tactcggttagagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttcatgaatgctcctg 358  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  167026 tactcggttagagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttcatgaatgctcctg 166948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 251 - 363
Target Start/End: Complemental strand, 106928 - 106816
Alignment:
Q  251 cagtggaaggcaatggaacctgtctacgatactcggttagagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttcatgaa 350  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  106928 cagtggaaggcaatggaacccgtctacgatactcggctagagcccacaaggggtaaatatctctatacattgggtaatgcaacatacaatttttcatgaa 106829  T
Q  351 tgctcctgtgatt 363  Q
    | |||||||||||    
T  106828 tactcctgtgatt 106816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 2306751 - 2306827
Alignment:
Q  1 ttaaaataatgtttgtgaaaatca-tttagtacaattcgtggttttggtttattttcattcgtggttaatagcattg 76  Q
    |||||||||||||||||||||||| ||||||| |||||||| |||| ||||| |||||||||||| |||||||||||    
T  2306751 ttaaaataatgtttgtgaaaatcactttagtagaattcgtgattttcgtttactttcattcgtggataatagcattg 2306827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 255 - 361
Target Start/End: Original strand, 88553 - 88659
Alignment:
Q  255 ggaaggcaatggaacctgtctacgatactcggttagagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttcatgaatgct 354  Q
    |||||||||||||||| ||||||||||||| |  |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||    
T  88553 ggaaggcaatggaacccgtctacgatactcagccagagcccacaatggaaaaatatttctatacattgggtaatgcaacatacaatttttcatgaatact 88652  T
Q  355 cctgtga 361  Q
    |||||||    
T  88653 cctgtga 88659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 251 - 363
Target Start/End: Complemental strand, 13055351 - 13055239
Alignment:
Q  251 cagtggaaggcaatggaacctgtctacgatactcggttagagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttcatgaa 350  Q
    ||||||||| ||||||||| | |||||||||||| | || ||||||||||||||||||||||||||||||||  |||||||||||||||||||| | |||    
T  13055351 cagtggaagacaatggaacatatctacgatactcagctaaagcccacaatgggaaaatatctctatacattgtataatgcaacatacaatttttgaagaa 13055252  T
Q  351 tgctcctgtgatt 363  Q
    | |||||||||||    
T  13055251 tactcctgtgatt 13055239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 13332728 - 13332658
Alignment:
Q  1 ttaaaataatgtttgtgaaaatca-tttagtacaattcgtggttttggtttattttcattcgtggttaata 70  Q
    |||||||||||||||||||||||| |||||||||||| |||||||| ||||||||| ||||||||||||||    
T  13332728 ttaaaataatgtttgtgaaaatcactttagtacaatttgtggttttcgtttattttaattcgtggttaata 13332658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 7e-28; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 21538163 - 21538084
Alignment:
Q  1 ttaaaataatgtttgtgaaaatca-tttagtacaattcgtggttttggtttattttcattcgtggttaatagcattgctg 79  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  21538163 ttaaaataatatttgtgaaaatcactttagtacaattcgtggttttcgtttattttcattcgtggttaatagcattgctg 21538084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 275 - 361
Target Start/End: Original strand, 5718267 - 5718353
Alignment:
Q  275 tacgatactcggttagagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttcatgaatgctcctgtga 361  Q
    ||||||| || | ||||||||||| |||||| ||||||||| |||||| |||||||| ||| || |||||||||||| || ||||||    
T  5718267 tacgatattcagctagagcccacattgggaatatatctctaaacattgcgtaatgcagcatgcagtttttcatgaatactgctgtga 5718353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 272 - 361
Target Start/End: Original strand, 5656649 - 5656738
Alignment:
Q  272 gtctacgatactcggttagagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttcatgaatgctcctgtga 361  Q
    |||||||||| || | ||||||||||| ||| || |||||||||||||| | |||||||| ||| || |||||||||||| |||| ||||    
T  5656649 gtctacgatattcagctagagcccacattggaaatatatctctatacatagcgtaatgcagcatgcagtttttcatgaatactcccgtga 5656738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 275 - 361
Target Start/End: Original strand, 5686120 - 5686206
Alignment:
Q  275 tacgatactcggttagagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttcatgaatgctcctgtga 361  Q
    ||||||| || | ||||||||||| |||||| ||||||||| |||| | |||||||| ||| || |||||||||||| || ||||||    
T  5686120 tacgatattcagctagagcccacattgggaatatatctctaaacatggcgtaatgcagcatgcagtttttcatgaatactgctgtga 5686206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 359
Target Start/End: Complemental strand, 5602756 - 5602663
Alignment:
Q  266 gaacctgtctacgatactcggttagagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttcatgaatgctcctgt 359  Q
    ||||| || ||||||| || | ||||||| ||| ||| ||| |||||||||||||||| ||||||||||| ||| |||||| | |||| |||||    
T  5602756 gaacccgtttacgatattcagctagagccaacattggaaaattatctctatacattggataatgcaacatgcaagttttcaaggatgcccctgt 5602663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 359
Target Start/End: Complemental strand, 5603018 - 5602925
Alignment:
Q  266 gaacctgtctacgatactcggttagagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttcatgaatgctcctgt 359  Q
    ||||| || ||||||| || | ||||||| ||| ||| ||| |||||||||||||||| ||||||||||| ||| |||||| | |||| |||||    
T  5603018 gaacccgtttacgatattcagctagagccaacattggaaaattatctctatacattggataatgcaacatgcaagttttcaaggatgcccctgt 5602925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 359
Target Start/End: Original strand, 5632352 - 5632445
Alignment:
Q  266 gaacctgtctacgatactcggttagagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttcatgaatgctcctgt 359  Q
    ||||| || ||||||| || | ||||||| ||| ||| ||| |||||||||||||||| ||||||||||| ||| |||||| | |||| |||||    
T  5632352 gaacccgtttacgatattcagctagagccaacattggaaaattatctctatacattggataatgcaacatgcaagttttcaaggatgcccctgt 5632445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 359
Target Start/End: Original strand, 5638186 - 5638279
Alignment:
Q  266 gaacctgtctacgatactcggttagagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttcatgaatgctcctgt 359  Q
    ||||| || ||||||| || | ||||||| ||| ||| ||| |||||||||||||||| ||||||||||| ||| |||||| | |||| |||||    
T  5638186 gaacccgtttacgatattcagctagagccaacattggaaaattatctctatacattggataatgcaacatgcaagttttcaaggatgcccctgt 5638279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 359
Target Start/End: Original strand, 5651384 - 5651477
Alignment:
Q  266 gaacctgtctacgatactcggttagagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttcatgaatgctcctgt 359  Q
    ||||| || ||||||| || | ||||||| ||| ||| ||| |||||||||||||||| ||||||||||| ||| |||||| | |||| |||||    
T  5651384 gaacccgtttacgatattcagctagagccaacattggaaaattatctctatacattggataatgcaacatgcaagttttcaaggatgcccctgt 5651477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 346
Target Start/End: Complemental strand, 5602170 - 5602090
Alignment:
Q  266 gaacctgtctacgatactcggttagagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttca 346  Q
    ||||| || ||||||| || | ||||||| ||| ||| ||| |||||||||||||||| ||||||||||| ||| ||||||    
T  5602170 gaacccgtttacgatattcagctagagccaacattggaaaattatctctatacattggataatgcaacatgcaagttttca 5602090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 346
Target Start/End: Original strand, 5638450 - 5638530
Alignment:
Q  266 gaacctgtctacgatactcggttagagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttca 346  Q
    ||||| || ||||||| || | ||||||| ||| ||| ||| |||||||||||||||| ||||||||||| ||| ||||||    
T  5638450 gaacccgtttacgatattcagctagagccaacattggaaaattatctctatacattggataatgcaacatgcaagttttca 5638530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 35840734 - 35840678
Alignment:
Q  25 tttagtacaattcgtggttttggtttattttcattcgtggttaatagcattgctgat 81  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  35840734 tttagtacaattcatggttttcgtttattttcattcgtggttaatagcattgctgat 35840678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 41570487 - 41570406
Alignment:
Q  1 ttaaaataatgtttgtgaaaatca-tttagtacaattcgtggttttggtttattttcattcgtggttaatagcattgctgat 81  Q
    |||||||||||||||||||||||| ||||| ||| || || ||||| |||| |||  ||||||||| |||||||||||||||    
T  41570487 ttaaaataatgtttgtgaaaatcactttagcacagtttgtcgttttcgtttgtttctattcgtggtgaatagcattgctgat 41570406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 289 - 363
Target Start/End: Original strand, 12134943 - 12135017
Alignment:
Q  289 agagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttcatgaatgctcctgtgatt 363  Q
    |||||||| | ||| ||||||| |||||||||||| |||||||||||||||||||||| || || ||||||||||    
T  12134943 agagcccatagtggaaaaatatttctatacattggataatgcaacatacaatttttcacgattgatcctgtgatt 12135017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University