View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17277_high_64 (Length: 377)

Name: NF17277_high_64
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17277_high_64
NF17277_high_64
[»] chr5 (16 HSPs)
chr5 (41-360)||(13380866-13381183)
chr5 (57-114)||(33752490-33752547)
chr5 (57-114)||(33848129-33848186)
chr5 (15-114)||(10053807-10053910)
chr5 (49-101)||(22616715-22616767)
chr5 (52-101)||(33163737-33163786)
chr5 (49-101)||(36055649-36055701)
chr5 (57-104)||(12080516-12080563)
chr5 (50-101)||(21320973-21321024)
chr5 (52-97)||(41417356-41417401)
chr5 (57-101)||(10237635-10237679)
chr5 (49-101)||(27579248-27579300)
chr5 (124-153)||(42682451-42682480)
chr5 (15-43)||(13381192-13381220)
chr5 (49-81)||(25654591-25654623)
chr5 (57-101)||(29766584-29766628)
[»] chr2 (16 HSPs)
chr2 (123-355)||(44595815-44596047)
chr2 (39-101)||(17244834-17244896)
chr2 (49-101)||(18059136-18059188)
chr2 (49-101)||(18947384-18947436)
chr2 (57-114)||(59382-59439)
chr2 (57-101)||(6177996-6178040)
chr2 (49-101)||(19093676-19093728)
chr2 (60-102)||(18514517-18514559)
chr2 (57-114)||(43445343-43445400)
chr2 (49-99)||(15651072-15651122)
chr2 (44-90)||(18779176-18779222)
chr2 (57-103)||(40912472-40912518)
chr2 (49-95)||(41644101-41644147)
chr2 (58-103)||(32652619-32652664)
chr2 (41-98)||(34441646-34441703)
chr2 (49-101)||(39788384-39788436)
[»] chr8 (9 HSPs)
chr8 (122-359)||(3859042-3859279)
chr8 (49-101)||(3038627-3038679)
chr8 (49-101)||(7290941-7290993)
chr8 (20-101)||(6267250-6267331)
chr8 (58-101)||(30651026-30651069)
chr8 (49-101)||(18756441-18756493)
chr8 (57-101)||(34685997-34686041)
chr8 (63-114)||(1872700-1872751)
chr8 (49-98)||(28220807-28220856)
[»] chr4 (9 HSPs)
chr4 (57-114)||(28292442-28292499)
chr4 (49-101)||(2570700-2570752)
chr4 (57-101)||(49878897-49878941)
chr4 (122-248)||(30578675-30578808)
chr4 (41-101)||(9743812-9743872)
chr4 (58-101)||(2266639-2266682)
chr4 (37-90)||(1012520-1012573)
chr4 (73-114)||(22722026-22722067)
chr4 (57-114)||(47237465-47237522)
[»] chr1 (10 HSPs)
chr1 (41-101)||(27118552-27118612)
chr1 (58-101)||(47554977-47555020)
chr1 (57-114)||(422192-422249)
chr1 (58-114)||(7842378-7842434)
chr1 (49-102)||(16135544-16135597)
chr1 (49-101)||(13876693-13876745)
chr1 (49-101)||(15964322-15964374)
chr1 (58-101)||(3120645-3120688)
chr1 (58-109)||(28012917-28012968)
chr1 (57-101)||(25943420-25943464)
[»] scaffold0001 (1 HSPs)
scaffold0001 (57-114)||(65979-66036)
[»] chr3 (19 HSPs)
chr3 (57-114)||(12121235-12121292)
chr3 (49-101)||(19606688-19606740)
chr3 (49-101)||(32180525-32180577)
chr3 (50-101)||(44881012-44881063)
chr3 (52-98)||(45879264-45879310)
chr3 (29-98)||(7758178-7758247)
chr3 (52-107)||(36689668-36689723)
chr3 (57-104)||(40744221-40744268)
chr3 (68-114)||(5125429-5125475)
chr3 (39-101)||(47930431-47930493)
chr3 (68-114)||(54607861-54607907)
chr3 (57-114)||(11019687-11019744)
chr3 (44-101)||(40640400-40640457)
chr3 (49-101)||(26000754-26000806)
chr3 (58-114)||(47871197-47871253)
chr3 (57-101)||(49359410-49359454)
chr3 (50-101)||(38392403-38392454)
chr3 (57-114)||(4556957-4557014)
chr3 (49-101)||(51878335-51878387)
[»] scaffold0200 (1 HSPs)
scaffold0200 (41-101)||(24584-24644)
[»] chr6 (3 HSPs)
chr6 (49-101)||(4104238-4104290)
chr6 (57-101)||(6613775-6613819)
chr6 (63-103)||(18306669-18306709)
[»] scaffold0312 (1 HSPs)
scaffold0312 (57-114)||(8323-8380)
[»] scaffold0050 (1 HSPs)
scaffold0050 (32-101)||(5811-5880)
[»] chr7 (9 HSPs)
chr7 (49-101)||(4618529-4618581)
chr7 (49-101)||(22955086-22955138)
chr7 (49-101)||(40382111-40382163)
chr7 (49-101)||(49002446-49002498)
chr7 (49-101)||(4902542-4902594)
chr7 (49-101)||(8133333-8133385)
chr7 (41-101)||(10675025-10675085)
chr7 (49-101)||(23402146-23402198)
chr7 (49-101)||(7743152-7743204)
[»] scaffold0003 (1 HSPs)
scaffold0003 (41-114)||(107936-108009)
[»] scaffold0262 (1 HSPs)
scaffold0262 (57-107)||(11455-11505)


Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 41 - 360
Target Start/End: Complemental strand, 13381183 - 13380866
Alignment:
Q  41 gtggatctctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaattacttttgattttaccttaattactgattttaaataaa 140  Q
    ||||| |||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  13381183 gtggacctctctaaggctaaactttaccttattataaatcaatcctcatacaaaatattaattacttttgattttaccttaattactgattttatataaa 13381084  T
Q  141 tgatgctacaaacaggaattgaattgttttgaactgttgagatagatgatgtttgtaaagtacagattttgtttgagtttgaaaatagagctgatgcctc 240  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  13381083 tgatgctacaaactggaattgcattgttttgaactgttgagatagatgatgtttgtaaagtacatattttgtttgagtttgaaaatagagctgatgcctc 13380984  T
Q  241 cagttttgtatgttggccacaaagtcaatcccttatgacttccctttcttttgcttgatgtatttcatagttttggttttgtgtctggcttaccaaaatt 340  Q
    ||||||||||||||||||| |||||  || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  13380983 cagttttgtatgttggccataaagt--attccttatgacttccctttctttcgcttgatgtatttcatagttttggttttgtgtctggcttaccaaaatt 13380886  T
Q  341 acattatgaaagttgtaact 360  Q
    ||||||||||||||||||||    
T  13380885 acattatgaaagttgtaact 13380866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 33752490 - 33752547
Alignment:
Q  57 ctaaactttaccttattacaaatcaatcatcatacaaaatattaattacttttgattt 114  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||    
T  33752490 ctaaactttaccttattaaaaatcaatcctcatacaaaatattaattatttttgattt 33752547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 33848129 - 33848186
Alignment:
Q  57 ctaaactttaccttattacaaatcaatcatcatacaaaatattaattacttttgattt 114  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||    
T  33848129 ctaaactttaccttattaaaaatcaatcctcatacaaaatattaattatttttgattt 33848186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 15 - 114
Target Start/End: Complemental strand, 10053910 - 10053807
Alignment:
Q  15 tataactgttgatgtcatgtcagctagtg--gatctctctaaagctaaactttaccttattacaaa--tcaatcatcatacaaaatattaattacttttg 110  Q
    |||||||||||||||||||||||||||||  || | |||||   ||||| ||||| ||||||||||  ||| || ||||||||||||||||||||| |||    
T  10053910 tataactgttgatgtcatgtcagctagtgtggaccactctacgactaaattttactttattacaaaaatcagtcctcatacaaaatattaattactcttg 10053811  T
Q  111 attt 114  Q
    ||||    
T  10053810 attt 10053807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 22616767 - 22616715
Alignment:
Q  49 ctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 101  Q
    ||||||| ||||||||||||||||||||||||| || ||||||||||||||||    
T  22616767 ctctaaaactaaactttaccttattacaaatcagtcctcatacaaaatattaa 22616715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 101
Target Start/End: Complemental strand, 33163786 - 33163737
Alignment:
Q  52 taaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 101  Q
    |||| ||||||||||||||||||||||||| || ||||||||||||||||    
T  33163786 taaaactaaactttaccttattacaaatcagtcttcatacaaaatattaa 33163737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 36055649 - 36055701
Alignment:
Q  49 ctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 101  Q
    ||||||| |||||||||||||||||||||||||||  |||||||| |||||||    
T  36055649 ctctaaaactaaactttaccttattacaaatcaattctcatacaagatattaa 36055701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 104
Target Start/End: Original strand, 12080516 - 12080563
Alignment:
Q  57 ctaaactttaccttattacaaatcaatcatcatacaaaatattaatta 104  Q
    ||||||||||||||||||||||||| || |||||||||||||| ||||    
T  12080516 ctaaactttaccttattacaaatcagtcctcatacaaaatatttatta 12080563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 101
Target Start/End: Complemental strand, 21321024 - 21320973
Alignment:
Q  50 tctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 101  Q
    |||||| ||||||||||||||  |||||||||||| ||||||||||||||||    
T  21321024 tctaaaactaaactttaccttcctacaaatcaatcctcatacaaaatattaa 21320973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 52 - 97
Target Start/End: Original strand, 41417356 - 41417401
Alignment:
Q  52 taaagctaaactttaccttattacaaatcaatcatcatacaaaata 97  Q
    |||| ||||| ||||||||||||||||||| |||||||||||||||    
T  41417356 taaaactaaattttaccttattacaaatcagtcatcatacaaaata 41417401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 10237679 - 10237635
Alignment:
Q  57 ctaaactttaccttattacaaatcaatcatcatacaaaatattaa 101  Q
    ||||||||||||||||||||||| | ||||| |||||||||||||    
T  10237679 ctaaactttaccttattacaaattagtcatcgtacaaaatattaa 10237635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 27579300 - 27579248
Alignment:
Q  49 ctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 101  Q
    ||||||| ||||||||||||||||||||||||| || | | ||||||||||||    
T  27579300 ctctaaaactaaactttaccttattacaaatcattccttaaacaaaatattaa 27579248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 153
Target Start/End: Complemental strand, 42682480 - 42682451
Alignment:
Q  124 tactgattttaaataaatgatgctacaaac 153  Q
    ||||||||||||||||||||||||||||||    
T  42682480 tactgattttaaataaatgatgctacaaac 42682451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 43
Target Start/End: Complemental strand, 13381220 - 13381192
Alignment:
Q  15 tataactgttgatgtcatgtcagctagtg 43  Q
    |||||||||||||||||||||||||||||    
T  13381220 tataactgttgatgtcatgtcagctagtg 13381192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 81
Target Start/End: Complemental strand, 25654623 - 25654591
Alignment:
Q  49 ctctaaagctaaactttaccttattacaaatca 81  Q
    ||||||| |||||||||||||||||||||||||    
T  25654623 ctctaaaactaaactttaccttattacaaatca 25654591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 29766584 - 29766628
Alignment:
Q  57 ctaaactttaccttattacaaatcaatcatcatacaaaatattaa 101  Q
    ||||||||||||||||||||||| | |  ||||||||||||||||    
T  29766584 ctaaactttaccttattacaaattagttctcatacaaaatattaa 29766628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 181; Significance: 1e-97; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 123 - 355
Target Start/End: Original strand, 44595815 - 44596047
Alignment:
Q  123 ttactgattttaaataaatgatgctacaaacaggaattgaattgttttgaactgttgagatagatgatgtttgtaaagtacagattttgtttgagtttga 222  Q
    ||||||||||||||||||||||||||||||| ||||||| |||| | |||||||||||||||||||||||| ||||||| || |||||||||||||||||    
T  44595815 ttactgattttaaataaatgatgctacaaactggaattgcattgctctgaactgttgagatagatgatgttggtaaagtgcatattttgtttgagtttga 44595914  T
Q  223 aaatagagctgatgcctccagttttgtatgttggccacaaagtcaatcccttatgacttccctttcttttgcttgatgtatttcatagttttggttttgt 322  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||    
T  44595915 aaatagagctgatgcctccagttttgtatgttgaccacaaagccaatcccttatgacttccctttcttttgcttgatgtattgcatagttttggttctgt 44596014  T
Q  323 gtctggcttaccaaaattacattatgaaagttg 355  Q
    |||||||||| |||||||||||| |||||||||    
T  44596015 gtctggcttatcaaaattacattctgaaagttg 44596047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 101
Target Start/End: Original strand, 17244834 - 17244896
Alignment:
Q  39 tagtggatctctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 101  Q
    ||||||| | ||||||| ||||||||||||||||||||||||| || ||||||||||||||||    
T  17244834 tagtggaccactctaaaactaaactttaccttattacaaatcactcctcatacaaaatattaa 17244896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 18059136 - 18059188
Alignment:
Q  49 ctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 101  Q
    ||||||| |||||||||||||| |||||||||| |||||||||||||||||||    
T  18059136 ctctaaaactaaactttaccttgttacaaatcagtcatcatacaaaatattaa 18059188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 18947384 - 18947436
Alignment:
Q  49 ctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 101  Q
    ||||||| ||||||||||||||||||||||||| || ||||||||||||||||    
T  18947384 ctctaaaactaaactttaccttattacaaatcagtcctcatacaaaatattaa 18947436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 59439 - 59382
Alignment:
Q  57 ctaaactttaccttattacaaatcaatcatcatacaaaatattaattacttttgattt 114  Q
    ||||| |||| ||||||| |||||| ||||| ||||||||||||||||||||||||||    
T  59439 ctaaattttatcttattataaatcagtcatcgtacaaaatattaattacttttgattt 59382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 6178040 - 6177996
Alignment:
Q  57 ctaaactttaccttattacaaatcaatcatcatacaaaatattaa 101  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||    
T  6178040 ctaaactttaccttattacaaatcagtcatcgtacaaaatattaa 6177996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 19093728 - 19093676
Alignment:
Q  49 ctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 101  Q
    ||||||| ||||||||||||||||||||||||| || || |||||||||||||    
T  19093728 ctctaaaactaaactttaccttattacaaatcagtcctcttacaaaatattaa 19093676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 102
Target Start/End: Original strand, 18514517 - 18514559
Alignment:
Q  60 aactttaccttattacaaatcaatcatcatacaaaatattaat 102  Q
    |||||||| |||||| |||||||||||||||||||||||||||    
T  18514517 aactttactttattataaatcaatcatcatacaaaatattaat 18514559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 43445343 - 43445400
Alignment:
Q  57 ctaaactttaccttattacaaatcaatcatcatacaaaatattaattacttttgattt 114  Q
    ||||| ||||| ||||||||||| | || | |||||||||||||||||||||||||||    
T  43445343 ctaaattttactttattacaaattagtccttatacaaaatattaattacttttgattt 43445400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 99
Target Start/End: Complemental strand, 15651122 - 15651072
Alignment:
Q  49 ctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatatt 99  Q
    |||||||  |||||||||| ||||||||||||| || ||||||||||||||    
T  15651122 ctctaaaattaaactttactttattacaaatcagtcctcatacaaaatatt 15651072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 90
Target Start/End: Original strand, 18779176 - 18779222
Alignment:
Q  44 gatctctctaaagctaaactttaccttattacaaatcaatcatcata 90  Q
    |||| ||||||| ||||||||||||||||||||||||| || |||||    
T  18779176 gatcactctaaaactaaactttaccttattacaaatcagtcgtcata 18779222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 103
Target Start/End: Original strand, 40912472 - 40912518
Alignment:
Q  57 ctaaactttaccttattacaaatcaatcatcatacaaaatattaatt 103  Q
    ||||| ||||| ||||||||||||| || ||||||||||||||||||    
T  40912472 ctaaattttactttattacaaatcagtcctcatacaaaatattaatt 40912518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 95
Target Start/End: Complemental strand, 41644147 - 41644101
Alignment:
Q  49 ctctaaagctaaactttaccttattacaaatcaatcatcatacaaaa 95  Q
    ||||||| ||||||| ||||||||||||||||| || ||||||||||    
T  41644147 ctctaaaactaaactctaccttattacaaatcagtcctcatacaaaa 41644101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 32652664 - 32652619
Alignment:
Q  58 taaactttaccttattacaaatcaatcatcatacaaaatattaatt 103  Q
    |||| ||||| ||||||||||||| || ||||||||||||||||||    
T  32652664 taaattttactttattacaaatcagtcctcatacaaaatattaatt 32652619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 34441646 - 34441703
Alignment:
Q  41 gtggatctctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatat 98  Q
    ||||||| || |||| |||| ||||| |||||||||||||| || |||||||||||||    
T  34441646 gtggatcactttaaaactaagctttatcttattacaaatcagtcctcatacaaaatat 34441703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 39788384 - 39788436
Alignment:
Q  49 ctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 101  Q
    |||||||  |||||||||||||||||||||||| |  |||||| |||||||||    
T  39788384 ctctaaaaataaactttaccttattacaaatcagttctcatacgaaatattaa 39788436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 174; Significance: 2e-93; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 122 - 359
Target Start/End: Complemental strand, 3859279 - 3859042
Alignment:
Q  122 attactgattttaaataaatgatgctacaaacaggaattgaattgttttgaactgttgagatagatgatgtttgtaaagtacagattttgtttgagtttg 221  Q
    |||||||||||||||||||| ||||||||||| ||||||| |||| |||||||||||||||||||||||  | |||||||||| ||||||||||||||||    
T  3859279 attactgattttaaataaattatgctacaaactggaattgcattgctttgaactgttgagatagatgataatggtaaagtacatattttgtttgagtttg 3859180  T
Q  222 aaaatagagctgatgcctccagttttgtatgttggccacaaagtcaatcccttatgacttccctttcttttgcttgatgtatttcatagttttggttttg 321  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||    
T  3859179 aaaatagagctgaggcctccagttttgtatgttgaccacaaagtcaatcccttatgacttccctttcttttgcttgatgtattgtatagttttggttatg 3859080  T
Q  322 tgtctggcttaccaaaattacattatgaaagttgtaac 359  Q
    ||  |||||||||||||||||||| |||||||||||||    
T  3859079 tgattggcttaccaaaattacattctgaaagttgtaac 3859042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 3038679 - 3038627
Alignment:
Q  49 ctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 101  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  3038679 ctctaaaactaaactttaccttattacaaatcaatcatcatacaaaatattaa 3038627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 7290993 - 7290941
Alignment:
Q  49 ctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 101  Q
    ||||||| |||||||||| ||||||||||||||||| ||||||||||||||||    
T  7290993 ctctaaaactaaactttatcttattacaaatcaatcctcatacaaaatattaa 7290941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 6267250 - 6267331
Alignment:
Q  20 ctgttgatgtcatgtcagctagtggatct-ctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 101  Q
    |||| |||||||||||| ||||||  ||| || |||| |||||||||| |||||||||||||| |||||||||||||||||||    
T  6267250 ctgtcgatgtcatgtcacctagtgt-tctgctttaaaactaaactttatcttattacaaatcagtcatcatacaaaatattaa 6267331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 101
Target Start/End: Original strand, 30651026 - 30651069
Alignment:
Q  58 taaactttaccttattacaaatcaatcatcatacaaaatattaa 101  Q
    |||||||||||||||||||||||| ||||||||| |||||||||    
T  30651026 taaactttaccttattacaaatcagtcatcatactaaatattaa 30651069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 18756441 - 18756493
Alignment:
Q  49 ctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 101  Q
    ||||||| |||| |||||||||||||||||||  || ||||||||||||||||    
T  18756441 ctctaaaactaatctttaccttattacaaatctgtcctcatacaaaatattaa 18756493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 34686041 - 34685997
Alignment:
Q  57 ctaaactttaccttattacaaatcaatcatcatacaaaatattaa 101  Q
    ||||||||||| ||||||||||||| || ||||||||||||||||    
T  34686041 ctaaactttactttattacaaatcagtcctcatacaaaatattaa 34685997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 63 - 114
Target Start/End: Original strand, 1872700 - 1872751
Alignment:
Q  63 tttaccttattacaaatcaatcatcatacaaaatattaattacttttgattt 114  Q
    ||||| |||||| |||||| || | |||||||||||||||||||||||||||    
T  1872700 tttactttattataaatcagtccttatacaaaatattaattacttttgattt 1872751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 28220807 - 28220856
Alignment:
Q  49 ctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatat 98  Q
    ||||||| |||| ||||| |||||||||||||| || |||||||||||||    
T  28220807 ctctaaaactaagctttatcttattacaaatcagtcctcatacaaaatat 28220856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 28292442 - 28292499
Alignment:
Q  57 ctaaactttaccttattacaaatcaatcatcatacaaaatattaattacttttgattt 114  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  28292442 ctaaactttaccttattacaaatcaataatcatacaaaatattaattacttttgattt 28292499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 2570752 - 2570700
Alignment:
Q  49 ctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 101  Q
    ||||||| ||||||||||||||||||||||||| || ||| ||||||||||||    
T  2570752 ctctaaaactaaactttaccttattacaaatcattcctcaaacaaaatattaa 2570700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 49878941 - 49878897
Alignment:
Q  57 ctaaactttaccttattacaaatcaatcatcatacaaaatattaa 101  Q
    |||||||||||||||||| |||||| |||||||||||||||||||    
T  49878941 ctaaactttaccttattataaatcagtcatcatacaaaatattaa 49878897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 248
Target Start/End: Complemental strand, 30578808 - 30578675
Alignment:
Q  122 attactgattttaaataaatgatgct---acaaacaggaattgaattgttttgaactgttgagatagatgatgtttgtaaagtacaga----ttttgttt 214  Q
    ||||||||||||||||| ||||||||   |||||| ||| ||   ||| | |||||| | ||||||||||||||| ||| ||| ||||    ||||||||    
T  30578808 attactgattttaaatatatgatgctgctacaaactggatttttgttgctctgaactttcgagatagatgatgttggtagagtgcagaaatattttgttt 30578709  T
Q  215 gagtttgaaaatagagctgatgcctccagttttg 248  Q
    | ||||||||||| || ||||||||||| |||||    
T  30578708 gcgtttgaaaataaagttgatgcctccatttttg 30578675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 9743872 - 9743812
Alignment:
Q  41 gtggatctctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 101  Q
    ||||||| ||||||| ||||| ||||| |||||||||| || || ||||||||||||||||    
T  9743872 gtggatcactctaaaactaaattttacattattacaaaccagtcctcatacaaaatattaa 9743812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 101
Target Start/End: Original strand, 2266639 - 2266682
Alignment:
Q  58 taaactttaccttattacaaatcaatcatcatacaaaatattaa 101  Q
    |||||||||| ||||||||||||| || ||||||||||||||||    
T  2266639 taaactttacattattacaaatcagtcctcatacaaaatattaa 2266682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 90
Target Start/End: Complemental strand, 1012573 - 1012520
Alignment:
Q  37 gctagtggatctctctaaagctaaactttaccttattacaaatcaatcatcata 90  Q
    ||||||||| |  |||||| ||||| |||||||||||||||||||||| |||||    
T  1012573 gctagtggaccattctaaaactaaattttaccttattacaaatcaatcttcata 1012520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 22722026 - 22722067
Alignment:
Q  73 tacaaatcaatcatcatacaaaatattaattacttttgattt 114  Q
    ||||||||| ||||| ||||||||||| ||||||||||||||    
T  22722026 tacaaatcattcatcgtacaaaatattgattacttttgattt 22722067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 47237522 - 47237465
Alignment:
Q  57 ctaaactttaccttattacaaatcaatcatcatacaaaatattaattacttttgattt 114  Q
    ||||||||| ||||||||||||||  || ||||| |||  ||||||||||||||||||    
T  47237522 ctaaacttttccttattacaaatcggtcctcatagaaagcattaattacttttgattt 47237465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 27118612 - 27118552
Alignment:
Q  41 gtggatctctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 101  Q
    ||||||| ||||||| ||| ||||||||||||||||||||| |||||||||||||||||||    
T  27118612 gtggatcactctaaaactatactttaccttattacaaatcagtcatcatacaaaatattaa 27118552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 58 - 101
Target Start/End: Complemental strand, 47555020 - 47554977
Alignment:
Q  58 taaactttaccttattacaaatcaatcatcatacaaaatattaa 101  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  47555020 taaactttaccttattacaaatcagtcatcatacaaaatattaa 47554977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 422249 - 422192
Alignment:
Q  57 ctaaactttaccttattacaaatcaatcatcatacaaaatattaattacttttgattt 114  Q
    ||||||||||| ||||||||| | | || |||||||||||||||||||||||||||||    
T  422249 ctaaactttactttattacaacttagtcctcatacaaaatattaattacttttgattt 422192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 7842434 - 7842378
Alignment:
Q  58 taaactttaccttattacaaatcaatcatcatacaaaatattaattacttttgattt 114  Q
    ||||||||| ||||||||||||||||| || || |||||||| ||||||||||||||    
T  7842434 taaactttatcttattacaaatcaatcctcgtaaaaaatatttattacttttgattt 7842378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 16135597 - 16135544
Alignment:
Q  49 ctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaat 102  Q
    ||||||| |||||||||||| |||||||||||| |  |||||||||||||||||    
T  16135597 ctctaaaactaaactttaccctattacaaatcagttctcatacaaaatattaat 16135544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 13876693 - 13876745
Alignment:
Q  49 ctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 101  Q
    ||||||| ||||||||||||||||||||||||  |  ||||||||||||||||    
T  13876693 ctctaaaactaaactttaccttattacaaatcggtactcatacaaaatattaa 13876745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 15964374 - 15964322
Alignment:
Q  49 ctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 101  Q
    ||||||| ||||| ||||||||||||||||||| || ||||| ||||||||||    
T  15964374 ctctaaaactaaattttaccttattacaaatcagtcctcatataaaatattaa 15964322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 101
Target Start/End: Original strand, 3120645 - 3120688
Alignment:
Q  58 taaactttaccttattacaaatcaatcatcatacaaaatattaa 101  Q
    |||||||||||||||||||||||| || |||||||| |||||||    
T  3120645 taaactttaccttattacaaatcagtcctcatacaatatattaa 3120688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 109
Target Start/End: Complemental strand, 28012968 - 28012917
Alignment:
Q  58 taaactttaccttattacaaatcaatcatcatacaaaatattaattactttt 109  Q
    |||||||||||||||||||||||| || || || ||| ||||||||||||||    
T  28012968 taaactttaccttattacaaatcagtcctcgtaaaaactattaattactttt 28012917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 25943464 - 25943420
Alignment:
Q  57 ctaaactttaccttattacaaatcaatcatcatacaaaatattaa 101  Q
    ||||| |||| |||||||||||||| ||||| |||||||||||||    
T  25943464 ctaaattttatcttattacaaatcagtcatcgtacaaaatattaa 25943420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 66036 - 65979
Alignment:
Q  57 ctaaactttaccttattacaaatcaatcatcatacaaaatattaattacttttgattt 114  Q
    |||||||||||||||||| |||| | || |||||||||||||||||||||||||||||    
T  66036 ctaaactttaccttattataaattagtcctcatacaaaatattaattacttttgattt 65979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 12121235 - 12121292
Alignment:
Q  57 ctaaactttaccttattacaaatcaatcatcatacaaaatattaattacttttgattt 114  Q
    ||||||||||||||||||||||| | || | |||||||||||||||||||||||||||    
T  12121235 ctaaactttaccttattacaaataactccttatacaaaatattaattacttttgattt 12121292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 19606688 - 19606740
Alignment:
Q  49 ctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 101  Q
    ||||||| ||||||||||||||||||||||||| || ||||||||||||||||    
T  19606688 ctctaaaactaaactttaccttattacaaatcagtcctcatacaaaatattaa 19606740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 32180525 - 32180577
Alignment:
Q  49 ctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 101  Q
    ||||||| ||||||||||||||||||||||||| || ||||||||||||||||    
T  32180525 ctctaaaactaaactttaccttattacaaatcagtcctcatacaaaatattaa 32180577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 101
Target Start/End: Complemental strand, 44881063 - 44881012
Alignment:
Q  50 tctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 101  Q
    |||||| |||||||||||||||||||||||||||| ||||| ||||||||||    
T  44881063 tctaaaactaaactttaccttattacaaatcaatcctcatataaaatattaa 44881012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 52 - 98
Target Start/End: Original strand, 45879264 - 45879310
Alignment:
Q  52 taaagctaaactttaccttattacaaatcaatcatcatacaaaatat 98  Q
    |||||||||||||||||||||||||||||| || |||||||||||||    
T  45879264 taaagctaaactttaccttattacaaatcagtcctcatacaaaatat 45879310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 98
Target Start/End: Original strand, 7758178 - 7758247
Alignment:
Q  29 tcatgtcagctagtggatctctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatat 98  Q
    ||||||||||||||||| | ||||||| |||| ||||| ||| |||||||||| || |||||||||||||    
T  7758178 tcatgtcagctagtggagcactctaaaactaagctttatctttttacaaatcagtcttcatacaaaatat 7758247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 107
Target Start/End: Complemental strand, 36689723 - 36689668
Alignment:
Q  52 taaagctaaactttaccttattacaaatcaatcatcatacaaaatattaattactt 107  Q
    |||| ||||||||||| ||||||||||| | || ||||||||||||||||||||||    
T  36689723 taaaactaaactttactttattacaaataagtcctcatacaaaatattaattactt 36689668  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 104
Target Start/End: Original strand, 40744221 - 40744268
Alignment:
Q  57 ctaaactttaccttattacaaatcaatcatcatacaaaatattaatta 104  Q
    |||||| ||||||||||||||||||||| ||||||||||||| |||||    
T  40744221 ctaaacattaccttattacaaatcaatcctcatacaaaatataaatta 40744268  T

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Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 5125475 - 5125429
Alignment:
Q  68 cttattacaaatcaatcatcatacaaaatattaattacttttgattt 114  Q
    |||||||||||||| || || ||||||||||||||||||||||||||    
T  5125475 cttattacaaatcagtcctcttacaaaatattaattacttttgattt 5125429  T

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Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 101
Target Start/End: Original strand, 47930431 - 47930493
Alignment:
Q  39 tagtggatctctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 101  Q
    ||||||| | ||||||| |||| |||||| ||||||||||||| |||| ||||||||||||||    
T  47930431 tagtggaccactctaaaactaagctttactttattacaaatcagtcattatacaaaatattaa 47930493  T

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Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 54607907 - 54607861
Alignment:
Q  68 cttattacaaatcaatcatcatacaaaatattaattacttttgattt 114  Q
    |||||||||||||| || || ||||||||||||||||||||||||||    
T  54607907 cttattacaaatcagtcttcttacaaaatattaattacttttgattt 54607861  T

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Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 11019744 - 11019687
Alignment:
Q  57 ctaaactttaccttattacaaatcaatcatcatacaaaatattaattacttttgattt 114  Q
    ||||| |||| |||||||||||||| || || || |||||||||||||||||||||||    
T  11019744 ctaaattttatcttattacaaatcagtcctcgtataaaatattaattacttttgattt 11019687  T

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Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 44 - 101
Target Start/End: Original strand, 40640400 - 40640457
Alignment:
Q  44 gatctctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 101  Q
    |||| ||||||| ||||||||||  ||||||||||||| || ||||||||||||||||    
T  40640400 gatcactctaaaactaaactttattttattacaaatcagtcctcatacaaaatattaa 40640457  T

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Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 26000806 - 26000754
Alignment:
Q  49 ctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 101  Q
    ||||||| ||||||||||| ||||||||||||| |  ||||||||||||||||    
T  26000806 ctctaaaactaaactttactttattacaaatcagtactcatacaaaatattaa 26000754  T

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Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 47871253 - 47871197
Alignment:
Q  58 taaactttaccttattacaaatcaatcatcatacaaaatattaattacttttgattt 114  Q
    ||||||||||  | |||||||||| || ||||| |||||||||||||||||||||||    
T  47871253 taaactttacaatgttacaaatcagtcctcatataaaatattaattacttttgattt 47871197  T

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Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 49359410 - 49359454
Alignment:
Q  57 ctaaactttaccttattacaaatcaatcatcatacaaaatattaa 101  Q
    |||||||||||||||||| |||||| || ||||||||||||||||    
T  49359410 ctaaactttaccttattataaatcagtcctcatacaaaatattaa 49359454  T

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Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 50 - 101
Target Start/End: Original strand, 38392403 - 38392454
Alignment:
Q  50 tctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 101  Q
    |||||| ||||| ||||| ||||||||||||| ||||| |||||||||||||    
T  38392403 tctaaaactaaattttacattattacaaatcagtcatcttacaaaatattaa 38392454  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 4557014 - 4556957
Alignment:
Q  57 ctaaactttaccttattacaaatcaatcatcatacaaaatattaattacttttgattt 114  Q
    ||||||||| ||||||||||||||| || | ||| |||| | ||||||||||||||||    
T  4557014 ctaaacttttccttattacaaatcagtccttataaaaaacaataattacttttgattt 4556957  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 51878387 - 51878335
Alignment:
Q  49 ctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 101  Q
    |||||||  |||||||||||||||||||| ||| |  ||||||||||||||||    
T  51878387 ctctaaaattaaactttaccttattacaattcagtactcatacaaaatattaa 51878335  T

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Target: scaffold0200 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 24584 - 24644
Alignment:
Q  41 gtggatctctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 101  Q
    ||||||| ||||| | ||||||||||||||||||||||||| ||||| |||||||||||||    
T  24584 gtggatcactctagaactaaactttaccttattacaaatcagtcatcgtacaaaatattaa 24644  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 4104290 - 4104238
Alignment:
Q  49 ctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 101  Q
    ||||||| ||||||||| |||||||||||||||||| ||||||||||||||||    
T  4104290 ctctaaaactaaactttgccttattacaaatcaatcttcatacaaaatattaa 4104238  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 6613775 - 6613819
Alignment:
Q  57 ctaaactttaccttattacaaatcaatcatcatacaaaatattaa 101  Q
    |||||||| |||||||||||||| |||| ||||||||||||||||    
T  6613775 ctaaacttcaccttattacaaatgaatcctcatacaaaatattaa 6613819  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 18306669 - 18306709
Alignment:
Q  63 tttaccttattacaaatcaatcatcatacaaaatattaatt 103  Q
    |||||||||||||||||||||| || |||||||||||||||    
T  18306669 tttaccttattacaaatcaatcctcgtacaaaatattaatt 18306709  T

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Target: scaffold0312 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 8323 - 8380
Alignment:
Q  57 ctaaactttaccttattacaaatcaatcatcatacaaaatattaattacttttgattt 114  Q
    ||||||||||| ||||||||| | | || |||||||||||||||||||||||||||||    
T  8323 ctaaactttactttattacaacttagtcctcatacaaaatattaattacttttgattt 8380  T

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Target: scaffold0050 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 101
Target Start/End: Complemental strand, 5880 - 5811
Alignment:
Q  32 tgtcagctagtggatctctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 101  Q
    |||| ||||||||| | ||||||| |||||||||||||||||| |||||| |  ||||||||||||||||    
T  5880 tgtctgctagtggaccactctaaaactaaactttaccttattataaatcagttctcatacaaaatattaa 5811  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 4618529 - 4618581
Alignment:
Q  49 ctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 101  Q
    ||||||| |||||||||| |||| ||||||||| |||||||||||||||||||    
T  4618529 ctctaaaactaaactttatcttactacaaatcagtcatcatacaaaatattaa 4618581  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 22955086 - 22955138
Alignment:
Q  49 ctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 101  Q
    ||||||| ||||||||||||||||||||||||| |  ||||||||||||||||    
T  22955086 ctctaaaactaaactttaccttattacaaatcagttctcatacaaaatattaa 22955138  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 40382163 - 40382111
Alignment:
Q  49 ctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 101  Q
    ||||||| ||||||||||||||||||||||||| ||  |||||||||||||||    
T  40382163 ctctaaaactaaactttaccttattacaaatcagtccgcatacaaaatattaa 40382111  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 49002498 - 49002446
Alignment:
Q  49 ctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 101  Q
    ||||||| ||||||||||||| ||||||||||| || ||||||||||||||||    
T  49002498 ctctaaaactaaactttacctcattacaaatcagtcctcatacaaaatattaa 49002446  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 4902594 - 4902542
Alignment:
Q  49 ctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 101  Q
    ||||||| ||||||||||||||||||||||| | |  ||||||||||||||||    
T  4902594 ctctaaaactaaactttaccttattacaaattagtactcatacaaaatattaa 4902542  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 8133333 - 8133385
Alignment:
Q  49 ctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 101  Q
    ||||||| ||||||||||||||||||||||||| || ||||  ||||||||||    
T  8133333 ctctaaaactaaactttaccttattacaaatcagtcttcatgtaaaatattaa 8133385  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 10675025 - 10675085
Alignment:
Q  41 gtggatctctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 101  Q
    ||||||| ||||||  ||||||||||| ||||||||||| | || ||||||||||||||||    
T  10675025 gtggatcactctaagactaaactttactttattacaaattagtcctcatacaaaatattaa 10675085  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 23402146 - 23402198
Alignment:
Q  49 ctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 101  Q
    ||||||| |||||||||| | |||||||||||| ||||| |||||||||||||    
T  23402146 ctctaaaactaaactttatcctattacaaatcagtcatcgtacaaaatattaa 23402198  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 7743204 - 7743152
Alignment:
Q  49 ctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaa 101  Q
    ||||||| |||||||||||||||||||||| ||  | ||||| ||||||||||    
T  7743204 ctctaaaactaaactttaccttattacaaagcagccctcatataaaatattaa 7743152  T

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Target: scaffold0003 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 114
Target Start/End: Complemental strand, 108009 - 107936
Alignment:
Q  41 gtggatctctctaaagctaaactttaccttattacaaatcaatcatcatacaaaatattaattacttttgattt 114  Q
    ||||||| ||||||  ||||||||| ||||||||||||||| || ||||| |||| || |||||||||| ||||    
T  108009 gtggatcactctaagtctaaacttttccttattacaaatcagtcttcatagaaaacataaattacttttaattt 107936  T

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Target: scaffold0262 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 107
Target Start/End: Original strand, 11455 - 11505
Alignment:
Q  57 ctaaactttaccttattacaaatcaatcatcatacaaaatattaattactt 107  Q
    ||||| |||| |||||||||||||| || |||||||||||| |||||||||    
T  11455 ctaaattttatcttattacaaatcagtcctcatacaaaataataattactt 11505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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