View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_high_65 (Length: 374)
Name: NF17277_high_65
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_high_65 |
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Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 24214421 - 24214064
Alignment:
| Q |
1 |
ctaatgacgagaagattggaagagcttgagttaaatcaaatatctgagtgaacaaagaaataaactttaacaaaaaatggtagaaaaaggaaagaacaag |
100 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
24214421 |
ctaatgacgagaagatgggaagagcttgagttaaatcaaatatctgagtgaacaaagaaataaactttaacgaaaaatggtagaaaaaggaaagaacaag |
24214322 |
T |
|
| Q |
101 |
aattgggaagcaattaaataaagagatgaacgaaaatgagacttcaatttgatgaaaaagataattaagtcacaaatgaccataacaaaaaatctatttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24214321 |
aattgggaagcaattaaataaagagatgaacgaaaatgagacttcaatttgatgaaaaagataattaagtcacaaatgaccataacaaaaaatctatttt |
24214222 |
T |
|
| Q |
201 |
cctacaacaaaagcaatgtgagctatagatgttaaaagacttcaaaaatatcataatcaacaaaggtgtatctacaacagagaaacattgatattgaaca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24214221 |
cctacaacaaaagcaatgtgagctatagatgttaaaagacttcaaaaatatcataatcaacaaaggtgtatctacaacagagaaacattgatattgaaca |
24214122 |
T |
|
| Q |
301 |
actttaaacaaatggaaatgcatgttataaggtaacaatagcagacgacaacaacaac |
358 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
24214121 |
actttaaacaaatggaaatgcatgttataaggtaacaatagcagaaaacaacaacaac |
24214064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 16844479 - 16844122
Alignment:
| Q |
1 |
ctaatgacgagaagattggaagagcttgagttaaatcaaatatctgagtgaacaaagaaataaactttaacaaaaaatggtagaaaaaggaaagaacaag |
100 |
Q |
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|||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||| |
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| T |
16844479 |
ctaatgacgagaagatcggaagagcttgagttaaataaaatacctgagtgaacaaagaaataaacattaacgaaaaatggtagaaaa-ggaaagaacaag |
16844381 |
T |
|
| Q |
101 |
aattgggaagcaattaaataaagagatgaacgaaaatgagacttcaattt-gatgaaaaagataattaagtcacaaatgaccataacaaaaaatctattt |
199 |
Q |
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|| |||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16844380 |
aagtgggaagcaattaaataaagagatgaacgaaaatgaaacttgaattttgatgaaaaagataattaagtcacaaatgaccataacaaaaaatctattt |
16844281 |
T |
|
| Q |
200 |
tcctacaacaaaagcaatgtgagctatagatgttaaaagacttcaaaaatatcataatcaacaaaggtgtatctacaacagagaaacattgatattgaac |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16844280 |
tcctacaacaaaagcaatgtgagctatagatgttaaaagacttcaaaaatatcagaatcaacaaaggtgtatctacaacagagaaacattgatattgaac |
16844181 |
T |
|
| Q |
300 |
aactttaaacaaatggaaatgcatgttataaggtaacaatagcagacgacaacaacaac |
358 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
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|
| T |
16844180 |
aactttaaacaaatggaaatggatgttataaggtaacaatagcagcaaacaacaacaac |
16844122 |
T |
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