View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_high_68 (Length: 368)
Name: NF17277_high_68
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_high_68 |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 19 - 356
Target Start/End: Original strand, 37531432 - 37531768
Alignment:
| Q |
19 |
aatatcagattaactagttttactcttaacaaagtttacataaaaacctatccaaataaagattcccaatcacatcataatcaaatgttccaacctaagg |
118 |
Q |
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| T |
37531432 |
aatatcagattaactagttttactcttaacaaagtttacataaaaacctatccaaataaagattccca-tcacatcataatcaaatgttccaacctaagg |
37531530 |
T |
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| Q |
119 |
acattatgaatattttgtaattttctccaagctcttcatcataaacatggaattgtcttgttgatacaaacatataaatatctatgttaccgttgtattg |
218 |
Q |
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| T |
37531531 |
acattttgaatattttgtaattttctccaagctcttcatcataaacatggaattgtcttgttgatacaaacatataaatatctatgttaccgttgtattg |
37531630 |
T |
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| Q |
219 |
tgggcagatacgacttattccgaaaagagagaaaaataaacacaatactacataactcatggttgatcctacaaacacatccattcaaatacagagcaat |
318 |
Q |
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| T |
37531631 |
tgggcagatacgacttattccgaaaagagagaaaaataaacacaatactacataactcatggttgatcctacaaacacatccattcaaatacagagcaat |
37531730 |
T |
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| Q |
319 |
tacataaaccttattaacctcctcaatatttcccccta |
356 |
Q |
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| T |
37531731 |
tacataaaccttattaacctcctcaatatttcccccta |
37531768 |
T |
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