View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17277_high_69 (Length: 367)
Name: NF17277_high_69
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_high_69 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 109 - 230
Target Start/End: Original strand, 32374335 - 32374456
Alignment:
| Q |
109 |
cttttaacagagagaaccggttagcaggtgaagaactttaaaatatgggtgacgtggcgcggcaattgagcgagtgtttgtaagcaagtgttagagcatc |
208 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
32374335 |
cttttaacggagagaaccggttaacaggtgaagaactttaaaaaatgggtgacgtggcgcggcaattgagcgagtgtttgtaagcaactgttagagcatc |
32374434 |
T |
|
| Q |
209 |
tgtacctagcagttctcatatt |
230 |
Q |
| |
|
||| ||||||||||||| |||| |
|
|
| T |
32374435 |
tgtccctagcagttctcttatt |
32374456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 32374242 - 32374304
Alignment:
| Q |
13 |
cagatgctaatgactgaagaggtggagacgtaaaaaagaggggcctttatattttttaattat |
75 |
Q |
| |
|
||||| ||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
32374242 |
cagatactaatgactgaagagatggaggcgtaaaaaaggggggcctttatattttttaattat |
32374304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 8e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 233 - 349
Target Start/End: Complemental strand, 12157821 - 12157705
Alignment:
| Q |
233 |
tattgatattgatattatatttgtgttttcacatgcatgttgaatattctaccatgcattttatcattccatgaatttacaatagaggaatacaatgatt |
332 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
12157821 |
tattgatattgacagtatatttgtgttttcacatgcatgttgaatattcaaccatgcatttcatcatttcatgaatttacaatataggaatacaatgatt |
12157722 |
T |
|
| Q |
333 |
aaattgtatgagatata |
349 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
12157721 |
aaattgtacgagatata |
12157705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 112 - 225
Target Start/End: Original strand, 7499849 - 7499962
Alignment:
| Q |
112 |
ttaacagagagaaccggttagcaggtgaagaactttaaaatatgggtgacgtggcgcggcaattgagcgagtgtttgtaagcaagtgttagagcatctgt |
211 |
Q |
| |
|
||||| ||||||| || || ||| ||||||||||||||| |||||||| ||||| | |||||||||||||||||||||||| | ||| ||| |||||| |
|
|
| T |
7499849 |
ttaacggagagaatcgagtaacagatgaagaactttaaaaaatgggtgatgtggctcagcaattgagcgagtgtttgtaagcgaccgtttgagaatctgt |
7499948 |
T |
|
| Q |
212 |
acctagcagttctc |
225 |
Q |
| |
|
||||||||||||| |
|
|
| T |
7499949 |
tcctagcagttctc |
7499962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 7499765 - 7499820
Alignment:
| Q |
16 |
atgctaatgactgaagaggtggagacgtaaaaaagaggggcctttatattttttaat |
72 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||| | ||||||||||||||||||| |
|
|
| T |
7499765 |
atgctaatgaccgaagaggtggagacgttaaaaa-tgaggcctttatattttttaat |
7499820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University