View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17277_high_7 (Length: 664)
Name: NF17277_high_7
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_high_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 90 - 186
Target Start/End: Original strand, 4402939 - 4403035
Alignment:
| Q |
90 |
tcatcagttattcatttctagaaatgttattttctatgagctgcattttccttttcataatttttcgtcatcttctacatcaagttcacctttacct |
186 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
4402939 |
tcatcagttattcatttctagaaataatattttctatgagctgcattttccttttcatgtttcttcgtcatcttctacatcaagttcacctttacct |
4403035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 562 - 648
Target Start/End: Original strand, 4403032 - 4403118
Alignment:
| Q |
562 |
acctaaaattttccttcaagcctctaaacatgagtgttggcaaaaggctgtgaaaactgaacttgattcccttgctttgaacaatac |
648 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4403032 |
acctaaaagttttcttcaagcctctaaacatgagtgttggcaaaaggctatgaaaactgaacttgattcacttgctttgaacaatac |
4403118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 16 - 147
Target Start/End: Original strand, 6096460 - 6096591
Alignment:
| Q |
16 |
catagggctagaaaggctgtttttcttggttacaaagagggagtcaaaggatatattctctatgagttactttctcatcagttattcatttctagaaatg |
115 |
Q |
| |
|
||||| |||||||| | |||||||||||||| |||||||| || || || |||||| | ||||| || | ||||||||| | | |||||||| |||| |
|
|
| T |
6096460 |
catagagctagaaaaacagtttttcttggttataaagagggtgtaaagggctatattttgtatgatttgcattctcatcaaatgattatttctaggaatg |
6096559 |
T |
|
| Q |
116 |
ttattttctatgagctgcattttccttttcat |
147 |
Q |
| |
|
||||||||| |||| ||||||||||||||| |
|
|
| T |
6096560 |
ttattttctttgaggatcattttccttttcat |
6096591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University