View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17277_high_73 (Length: 356)
Name: NF17277_high_73
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_high_73 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 6283619 - 6283875
Alignment:
| Q |
1 |
aattctcattatttgatccaagagtacaatacaccttatatatagttcatagaggtgtaggatagttatagtacaagtgttgtatatgctatacaaatcc |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
6283619 |
aattctcattatttgatccaagagaacaatacaccttatatatagttcatagaggtgtaggatagttatagtacaagtgttgtatatgctatacaaattc |
6283718 |
T |
|
| Q |
101 |
taagacaattagttataactaactggctagataacttgctacacaagttatctctatatatagaagaggttaagaagcttcaatgtcttcgtgagccaat |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6283719 |
ttagacaattagttataactaactggctagataacttgctacacaagttatctc----tatagaagaggttaagaagcttcaatgtcttcatgagccaat |
6283814 |
T |
|
| Q |
201 |
agttcgaacttatcttgtaaaaaggatgggtggatcaaacttgactagaggtttttattgt |
261 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
6283815 |
agtttgaacttatcttgtaaaaaggatgggtggatcaaacttgactagagatttttattgt |
6283875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 7 - 82
Target Start/End: Complemental strand, 13757407 - 13757332
Alignment:
| Q |
7 |
cattatttgatccaagagtacaatacaccttatatatagttcatagaggtgtaggatagttatagtacaagtgttg |
82 |
Q |
| |
|
||||| |||||| ||||||| ||||||| ||||||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
13757407 |
cattacttgatcaaagagtagaatacacattatatagagttcatagaggtgtaggatagttattgtacaagtgttg |
13757332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 245 - 306
Target Start/End: Original strand, 6283887 - 6283948
Alignment:
| Q |
245 |
ctagaggtttttattgtcttgatcttagaagtcaaaacattatttataagaagtaaagtaat |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| |||| |||| |||||| |
|
|
| T |
6283887 |
ctagaggtttttattgtcttgatcttagaagtccaaacattatttttaagtagtatagtaat |
6283948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 38644477 - 38644542
Alignment:
| Q |
20 |
aagagtacaatacaccttatatatagttcatagaggtgtaggatagttatagtacaagtgttgtat |
85 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||| || ||||| |
|
|
| T |
38644477 |
aagagtacaatacaccttatatagagttcatggaggtgtaggatagttatggtacaaatgatgtat |
38644542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 123
Target Start/End: Original strand, 39845124 - 39845243
Alignment:
| Q |
2 |
attctcattatttgatccaagagtacaatacaccttatatatagttcatagaggtgtaggatagttatagtacaagtgttgtatatgctatacaaatcct |
101 |
Q |
| |
|
||||||||||||||||| |||||||| |||| ||| |||||| ||||| ||||||||||||||||| |||| |||| ||||| |||||| || || |
|
|
| T |
39845124 |
attctcattatttgatcatagagtacattacagcttgtatataattcatgaaggtgtaggatagttatgataca--tgttctatattctatactaactct |
39845221 |
T |
|
| Q |
102 |
aagacaattagttataactaac |
123 |
Q |
| |
|
|| ||| ||||||| ||||||| |
|
|
| T |
39845222 |
aaaacagttagttacaactaac |
39845243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 155
Target Start/End: Complemental strand, 1143963 - 1143905
Alignment:
| Q |
97 |
atcctaagacaattagttataactaactggctagataacttgctacacaagttatctct |
155 |
Q |
| |
|
||||||| ||| |||||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
1143963 |
atcctaatacagttagttataactaactagctagataacttgtggaacaagttatctct |
1143905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University