View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17277_high_88 (Length: 322)

Name: NF17277_high_88
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17277_high_88
NF17277_high_88
[»] chr6 (4 HSPs)
chr6 (139-300)||(26619785-26619946)
chr6 (139-300)||(26725698-26725859)
chr6 (139-300)||(5130382-5130543)
chr6 (3-142)||(31112865-31113002)
[»] chr4 (4 HSPs)
chr4 (139-300)||(1506673-1506834)
chr4 (4-153)||(6735013-6735163)
chr4 (1-156)||(31662927-31663080)
chr4 (141-225)||(13713809-13713893)
[»] chr1 (4 HSPs)
chr1 (1-153)||(15088835-15088986)
chr1 (1-153)||(22211443-22211594)
chr1 (121-217)||(9392364-9392461)
chr1 (1-63)||(22217919-22217981)
[»] chr3 (7 HSPs)
chr3 (1-197)||(5939205-5939402)
chr3 (9-300)||(2746320-2746611)
chr3 (1-155)||(18111797-18111949)
chr3 (1-153)||(28035030-28035174)
chr3 (1-129)||(5835835-5835964)
chr3 (1-155)||(19451640-19451792)
chr3 (157-197)||(5835971-5836011)
[»] chr7 (3 HSPs)
chr7 (1-153)||(3078313-3078464)
chr7 (1-153)||(3081494-3081643)
chr7 (1-155)||(34456035-34456187)
[»] chr2 (3 HSPs)
chr2 (8-155)||(31315385-31315530)
chr2 (1-155)||(31343043-31343195)
chr2 (133-300)||(20112236-20112402)
[»] chr8 (1 HSPs)
chr8 (1-155)||(25336839-25336994)
[»] scaffold0043 (1 HSPs)
scaffold0043 (40-300)||(69275-69538)


Alignment Details
Target: chr6 (Bit Score: 150; Significance: 3e-79; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 139 - 300
Target Start/End: Complemental strand, 26619946 - 26619785
Alignment:
Q  139 ctaaaggaactcaccttagcattttcctgaattctctacaccatttaggtctcaaataacttctgtcagcttcataatcacgcttctgcagaacagctga 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  26619946 ctaaaggaactcaccttagcattttcctgaattctctacaccatttaggtctcaaataacttctgtcagcttcataatcacgcttctgcaaaacggctga 26619847  T
Q  239 tttcgggttatcttttctgcttttaactttctgtatttcaacttgaaaccaaacacttattc 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  26619846 tttcgggttatcttttctgcttttaactttctgtatttcaacttgaaaacaaacacttattc 26619785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 139 - 300
Target Start/End: Complemental strand, 26725859 - 26725698
Alignment:
Q  139 ctaaaggaactcaccttagcattttcctgaattctctacaccatttaggtctcaaataacttctgtcagcttcataatcacgcttctgcagaacagctga 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  26725859 ctaaaggaactcaccttagcattttcctgaattctctacaccatttaggtctcaaataacttctgtcagcttcataatcacgcttctgcaaaacggctga 26725760  T
Q  239 tttcgggttatcttttctgcttttaactttctgtatttcaacttgaaaccaaacacttattc 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  26725759 tttcgggttatcttttctgcttttaactttctgtatttcaacttgaaaacaaacacttattc 26725698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 139 - 300
Target Start/End: Complemental strand, 5130543 - 5130382
Alignment:
Q  139 ctaaaggaactcaccttagcattttcctgaattctctacaccatttaggtctcaaataacttctgtcagcttcataatcacgcttctgcagaacagctga 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  5130543 ctaaaggaactcaccttagcattttcctgaattctctacaccatttaggtctcaaataacttctgtcagcttcataatcacgcttctgcaaaacggctga 5130444  T
Q  239 tttcgggttatcttttctgcttttaactttctgtatttcaacttgaaaccaaacacttattc 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  5130443 tttcgggttatcttttctgcttttaactttctgtatttcaacttgaaaacaaacaattattc 5130382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 3 - 142
Target Start/End: Complemental strand, 31113002 - 31112865
Alignment:
Q  3 cattgatatcatataagatttcattcacattatcatgactttgcataaccattaaaatctcagtttgtattgagtaaaagtaaataacacaattttaatg 102  Q
    ||||||||| |||||| |||||||||||||||||||||||| ||||| ||||||||| |||| |||||| | ||||||||||||||||||||||| ||||    
T  31113002 cattgatattatataaaatttcattcacattatcatgactt-gcatatccattaaaacctca-tttgtactaagtaaaagtaaataacacaatttcaatg 31112905  T
Q  103 acatgattcaaactactcaaagggagacttaactaactaa 142  Q
    |||||||||||||||| ||||| |||| ||||||||||||    
T  31112904 acatgattcaaactacccaaagagagagttaactaactaa 31112865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 142; Significance: 2e-74; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 139 - 300
Target Start/End: Original strand, 1506673 - 1506834
Alignment:
Q  139 ctaaaggaactcaccttagcattttcctgaattctctacaccatttaggtctcaaataacttctgtcagcttcataatcacgcttctgcagaacagctga 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||    
T  1506673 ctaaaggaactcaccttagcattttcctgaattctctacaccatttaggtctcaaataacttctgtcagcttcttaatcacgcttctgcaaaacggctga 1506772  T
Q  239 tttcgggttatcttttctgcttttaactttctgtatttcaacttgaaaccaaacacttattc 300  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  1506773 ttttgggttatcttttctgcttttaactttctgtatttcaacttgaaaacaaacacttattc 1506834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 4 - 153
Target Start/End: Complemental strand, 6735163 - 6735013
Alignment:
Q  4 attgatatcatataagatttcattcacattatcatgactttgcataaccattaaaatctcagtttgtattgagt---aaaagtaaataacacaattttaa 100  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||   |||||||||||||||||||| |     
T  6735163 attgatatcatataaaatttcattcacattatcgtgactttgcataaccattaaaatctc-gtttgtattgagtaaaaaaagtaaataacacaatttcac 6735065  T
Q  101 tgacatgattcaaactactcaaagggagacttaactaactaaaggaactcacc 153  Q
    |||||||||| ||||||| |||||||||| |||||||||| ||||||||||||    
T  6735064 tgacatgattaaaactacccaaagggagagttaactaact-aaggaactcacc 6735013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 31663080 - 31662927
Alignment:
Q  1 aacattgatatcatataagatttcattcacattatcatgactttgcataaccattaaaatctcagtttgtattgagt-aaaagtaaataacacaatttta 99  Q
    |||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||| |||   ||||||||||| ||||||||||| ||| |||| |    
T  31663080 aacattcatatcatatacaatttcattcacattatcatgactttgcataaccattaaaacctc--gttgtattgagtaaaaagtaaatagcaccatttca 31662983  T
Q  100 atgacatgattcaaactactcaaagggagacttaactaactaaaggaactcacctta 156  Q
    ||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||    
T  31662982 atgacatgattcaaactacccaaagggagagttaactaact-aaggaactcacctta 31662927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 141 - 225
Target Start/End: Original strand, 13713809 - 13713893
Alignment:
Q  141 aaaggaactcaccttagcattttcctgaattctctacaccatttaggtctcaaataacttctgtcagcttcataatcacgcttct 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||    
T  13713809 aaaggaactcaccttagcattttcctgaattctctacaccatttagctctcaaataacttatgtcagcttcataatcacgtttct 13713893  T

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Target: chr1 (Bit Score: 133; Significance: 4e-69; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 15088835 - 15088986
Alignment:
Q  1 aacattgatatcatataagatttcattcacattatcatgactttgcataaccattaaaatctcagtttgtattgagtaaaagtaaataacacaattttaa 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  15088835 aacattgatatcatacaagatttcattcacattatcatgactttgcataaccattaaaatctc-gtttgtattgagtaaaagtaaataacacaattttaa 15088933  T
Q  101 tgacatgattcaaactactcaaagggagacttaactaactaaaggaactcacc 153  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  15088934 tgacatgattcaaactattcaaagggagagttaactaactaaaggaactcacc 15088986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 22211443 - 22211594
Alignment:
Q  1 aacattgatatcatataagatttcattcacattatcatgactttgcataaccattaaaatctcagtttgtattgagtaaaagtaaataacacaattttaa 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  22211443 aacattgatatcatacaagatttcattcacattatcatgactttgcataaccattaaaatctc-gtttgtattgagtaaaagtaaataacacaattttaa 22211541  T
Q  101 tgacatgattcaaactactcaaagggagacttaactaactaaaggaactcacc 153  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  22211542 tgacatgattcaaactattcaaagggagagttaactaactaaaggaactcacc 22211594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 121 - 217
Target Start/End: Original strand, 9392364 - 9392461
Alignment:
Q  121 aaagggagacttaactaactaaaggaactcaccttagcattttcctgaattctctacaccatttaggtctcaaata-acttctgtcagcttcataatc 217  Q
    ||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||| ||| ||| |||||||||||||    
T  9392364 aaagggagagttaactaactaaaggaactcacctcggcattttcctgaattctctacaccatttaagtctcaaatacactcctgccagcttcataatc 9392461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 22217919 - 22217981
Alignment:
Q  1 aacattgatatcatataagatttcattcacattatcatgactttgcataaccattaaaatctc 63  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  22217919 aacattgatatcatacaagatttcattcacattatcatgactttgcataaccattaaaatctc 22217981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 128; Significance: 4e-66; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 5939205 - 5939402
Alignment:
Q  1 aacattgatatcatataagatttcattcacattat--catgactttgcataaccattaaaatctcagtttgtattgagtaaaagtaaataacacaatttt 98  Q
    ||||||||||||||||||  |||||||| ||||||  ||| |||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||    
T  5939205 aacattgatatcatataaagtttcattcgcattatatcataactttgcataaccattaaaacctc-gtttatattgagtaaaagtaaataacacaatttt 5939303  T
Q  99 aatgacatgattcaaactactcaaagggagacttaactaactaaaggaactcaccttagcattttcctgaattctctacaccatttaggtctcaaataa 197  Q
    |||||||| ||||||||||| |||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||| |||||||| |||||||||||    
T  5939304 aatgacataattcaaactacccaaagggagagttaactaactaaaggaacttaccttggcattttcctgaattctctataccatttaagtctcaaataa 5939402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 9 - 300
Target Start/End: Complemental strand, 2746611 - 2746320
Alignment:
Q  9 tatcatataagatttcattcacattatcatgactttgcataaccattaaaatctcagtttgtattgagtaaaagtaaataacacaattttaatgacatga 108  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||||| ||| | |||||||||||||||||||||| ||| |||| ||||||||||    
T  2746611 tatcatataaaatttcattcacattaacatgactttgcataaccattaaaacctc-gattgtattgagtaaaagtaaatagcaccatttcaatgacatga 2746513  T
Q  109 ttcaaactactcaaagggagacttaactaactaaaggaactcaccttagcattttcctgaattctctacaccatttaggtctcaaat-aacttctgtcag 207  Q
    |||||||||| |||||||||| |||||||||| ||||||||||||||  ||||||||| |||| ||||||||||||| ||||||||| ||||  ||||||    
T  2746512 ttcaaactacccaaagggagagttaactaact-aaggaactcaccttgacattttcctaaattatctacaccatttaagtctcaaataaactcttgtcag 2746414  T
Q  208 cttcataatcacgcttctgcagaacagctgatttcgggttatct-tttctgcttttaactttctgtatttcaacttgaaaccaaacacttattc 300  Q
    ||||||| |  |  ||||||| ||||| | ||| ||| || | |   || |||| ||||||| ||||||||||||| ||| |||||||||||||    
T  2746413 cttcatagttgcttttctgcaaaacagtttattgcggcttttttacgtcagcttctaactttatgtatttcaacttcaaaacaaacacttattc 2746320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 18111797 - 18111949
Alignment:
Q  1 aacattgatatcatataagatttcattcacattatcatgactttgcataaccattaaaatctcagtttgtattgagtaaaagtaaataacacaattttaa 100  Q
    |||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||| ||| |||| ||    
T  18111797 aacattcatatcatatacaatttcattcacattatcatgactttgcataaccattaaaacctc-gattgtattgagtaaaagtaaatagcaccatttcaa 18111895  T
Q  101 tgacatgattcaaactactcaaagggagacttaactaactaaaggaactcacctt 155  Q
    |||||||||||||||||  |||||||||| |||||||||| ||||||||||||||    
T  18111896 tgacatgattcaaactatccaaagggagagttaactaact-aaggaactcacctt 18111949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 28035030 - 28035174
Alignment:
Q  1 aacattgatatcatataagatttcattcacattat--catgactttgcataaccattaaaatctcagtttgtattgagtaaaagtaaataacacaatttt 98  Q
    ||||||||||||||||||  |||||||| ||||||  ||||||||||||||||||||          |||||||||||||||||||||||||||||||||    
T  28035030 aacattgatatcatataaagtttcattcgcattatatcatgactttgcataaccatt----------tttgtattgagtaaaagtaaataacacaatttt 28035119  T
Q  99 aatgacatgattcaaactactcaaagggagacttaactaactaaaggaactcacc 153  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  28035120 aatgacatgattcaaactacccaaagggagagttaactaactaaaggaactcacc 28035174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 5835835 - 5835964
Alignment:
Q  1 aacattgatatcatataagatttcattcacattat--catgactttgcataaccattaaaatctcagtttgtattgagtaaaagtaaataacacaatttt 98  Q
    ||||||||||||||||||  |||||||| ||||||  ||| |||||||||||||||||||| | | |||| |||||||||||||||||||||||||||||    
T  5835835 aacattgatatcatataaagtttcattcgcattatatcataactttgcataaccattaaaacccc-gtttatattgagtaaaagtaaataacacaatttt 5835933  T
Q  99 aatgacatgattcaaactactcaaagggaga 129  Q
    ||| |||| ||||||||||| ||||||||||    
T  5835934 aataacataattcaaactacccaaagggaga 5835964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 19451640 - 19451792
Alignment:
Q  1 aacattgatatcatataagatttcattcacattatcatgactttgcataaccattaaaatctcagtttgtattgagtaaaagtaaataacacaattttaa 100  Q
    |||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||| ||| |||||||   ||||||||||||||||| | |   ||    
T  19451640 aacattgatatcatataaaatttcattcacattatcatgacttagcataaccataaaaacctc-gtttgtaccaagtaaaagtaaataacaaagtcaaaa 19451738  T
Q  101 tgacatgattcaaactactcaaagggagacttaactaactaaaggaactcacctt 155  Q
    ||||||  ||||||||||  ||||| ||| |||||||||| ||||||||||||||    
T  19451739 tgacatagttcaaactaccgaaaggaagagttaactaact-aaggaactcacctt 19451792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 5835971 - 5836011
Alignment:
Q  157 gcattttcctgaattctctacaccatttaggtctcaaataa 197  Q
    |||||||||||||||||||||||||||||  ||||||||||    
T  5835971 gcattttcctgaattctctacaccatttaaatctcaaataa 5836011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 3078464 - 3078313
Alignment:
Q  1 aacattgatatcatataagatttcattcacattatcatgactttgcataaccattaaaatctcagtttgtattgagtaaaagtaaataacacaattttaa 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||    
T  3078464 aacattgatatcatataagatttcattcacattatcatgattttgcataaccattaaaatctct-tttgtattgagtaaaagtaaataacacaatttgaa 3078366  T
Q  101 tgacatgattcaaactactcaaagggagacttaactaactaaaggaactcacc 153  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  3078365 tgacatgattcaaactactcaaagggacagttaactaactaaaggaactcacc 3078313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 3081494 - 3081643
Alignment:
Q  1 aacattgatatcatataagatttcattcacattatcatgactttgcataaccattaaaatctcagtttgtattgagtaaaagtaaataacacaattttaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||| | ||    
T  3081494 aacattgatatcatataagatttcattcacattatcatgactttgcataaccattaaaatctc---ttgtattgagtaaaagtaaataacacaatatgaa 3081590  T
Q  101 tgacatgattcaaactactcaaagggagacttaactaactaaaggaactcacc 153  Q
    ||||||||||||||||||||||| ||| | |||||||||||||||||||||||    
T  3081591 tgacatgattcaaactactcaaatggatagttaactaactaaaggaactcacc 3081643  T

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Target: chr7; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 34456187 - 34456035
Alignment:
Q  1 aacattgatatcatataagatttcattcacattatcatgactttgcataaccattaaaatctcagtttgtattgagtaaaagtaaataacacaattttaa 100  Q
    |||||| ||||||||||  ||||| |||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||  |||| ||    
T  34456187 aacattcatatcatatacaatttcgttcacattatcatgactttgcataaccattaaaacctc-gattgtattgagtaaaagtaaataacatcatttcaa 34456089  T
Q  101 tgacatgattcaaactactcaaagggagacttaactaactaaaggaactcacctt 155  Q
    |||||||||||||||||| ||||||||||  ||||||||| ||||||||||||||    
T  34456088 tgacatgattcaaactacccaaagggagagctaactaact-aaggaactcacctt 34456035  T

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Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 8 - 155
Target Start/End: Original strand, 31315385 - 31315530
Alignment:
Q  8 atatcatataagatttcattcacattatcatgactttgcataaccattaaaatctcagtttgtattgagtaaaagtaaataacacaattttaatgacatg 107  Q
    ||||||||||  ||||| |||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||| ||| |||| |||||||||    
T  31315385 atatcatatacaatttcgttcacattatcatgactttgcataaccattaaaacctc-gattgtattgagtaaaagtaaatagcaccatttcaatgacatg 31315483  T
Q  108 attcaaactactcaaagggagacttaactaactaaaggaactcacctt 155  Q
    ||||||||||| |||||||||| |||||||||| ||||||||||||||    
T  31315484 attcaaactacccaaagggagagttaactaact-aaggaactcacctt 31315530  T

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Target: chr2; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 31343195 - 31343043
Alignment:
Q  1 aacattgatatcatataagatttcattcacattatcatgactttgcataaccattaaaatctcagtttgtattgagtaaaagtaaataacacaattttaa 100  Q
    |||||| ||||||||||  ||||||||||||||||||||| |||||||||||||||||| |||| || |||||||||||||| ||||| ||| |||| ||    
T  31343195 aacattcatatcatatacaatttcattcacattatcatgaatttgcataaccattaaaacctcaatt-gtattgagtaaaaggaaatagcaccatttcaa 31343097  T
Q  101 tgacatgattcaaactactcaaagggagacttaactaactaaaggaactcacctt 155  Q
    |||||||||||||||||| |||||||||| |||||||||| ||||||||||||||    
T  31343096 tgacatgattcaaactacccaaagggagagttaactaact-aaggaactcacctt 31343043  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 300
Target Start/End: Original strand, 20112236 - 20112402
Alignment:
Q  133 aactaactaaaggaactcaccttagcattttcctgaattctctacaccatttaggtctcaaataa-cttctgtcagcttcataatcacgcttctgcagaa 231  Q
    ||||||||||||||| |||| |||||||||  ||||||||||||||||  ||| | | ||| ||| || ||| ||||| |||||||||   ||| || ||    
T  20112236 aactaactaaaggaaatcacgttagcattt--ctgaattctctacaccgcttatgccccaattaagctcctgccagctccataatcacttctctccaaaa 20112333  T
Q  232 cagctgatttcgggttatct-tttctgcttttaactttctgtatttcaacttgaaaccaaacacttattc 300  Q
    || || ||||||| |||| |  |||||||| ||||||| ||  ||||||||| ||||||||| |||||||    
T  20112334 caacttatttcggcttatttgcttctgcttctaacttt-tgcctttcaacttcaaaccaaactcttattc 20112402  T

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Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 25336839 - 25336994
Alignment:
Q  1 aacattgatatcatataagatttcattcacattat--catgactttgcataaccattaaaatctcagtttgtattgagtaaaagtaaataacacaatttt 98  Q
    |||||| |||||||||||  |||||||| ||||||  ||| ||||||||||||||||||||  || |||| |||||||||||||||||||||||||| ||    
T  25336839 aacattaatatcatataaagtttcattcgcattatatcataactttgcataaccattaaaacgtc-gtttatattgagtaaaagtaaataacacaatatt 25336937  T
Q  99 aatgacatgattcaaactactcaaagggagacttaactaactaaaggaactcacctt 155  Q
    || ||||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  25336938 aacgacatgattcaaactacccaaagggagagttaactaactaaaggaactcacctt 25336994  T

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Target: scaffold0043 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 40 - 300
Target Start/End: Complemental strand, 69538 - 69275
Alignment:
Q  40 actttgcataaccattaaaatctcagtttgtattgagtaaaagtaaataacacaattttaatgacatga-ttcaaactactc--aaagggagacttaact 136  Q
    ||||||||||| |||||||| |||  || ||||||||||||||||||||| ||||||| |||||||||| |||||||||| |  ||||||||| ||||||    
T  69538 actttgcataagcattaaaacctct-ttggtattgagtaaaagtaaataatacaatttcaatgacatgaattcaaactacccccaaagggagagttaact 69440  T
Q  137 aactaaaggaactcaccttagcattttcctgaattctctacaccatttaggtctcaaat-aacttctgtcagcttcataatcacgcttctgc-agaacag 234  Q
    |||||| |||||| |||||  ||||||||| |||| ||||||||||||| ||||||||| ||||  ||||||||||||| || |  |||||| | |||||    
T  69439 aactaa-ggaacttaccttgacattttcctcaattatctacaccatttaagtctcaaataaactcttgtcagcttcatagtcgcttttctgcaaaaacag 69341  T
Q  235 ctgatttcgggttatcttttctgcttttaactttctgtatttcaacttgaaaccaaacacttattc 300  Q
     | ||| ||| || |    || |||| ||||||| ||||||||||||| ||| |||||||||||||    
T  69340 tttattgcggctttttacgtcagcttctaactttatgtatttcaacttcaaaacaaacacttattc 69275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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