View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17277_high_96 (Length: 311)

Name: NF17277_high_96
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17277_high_96
NF17277_high_96
[»] chr3 (1 HSPs)
chr3 (1-296)||(40603623-40603918)


Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 40603623 - 40603918
Alignment:
Q  1 gcaagatcctccacaatgaaactaaattccaatgttattgagtggtaaagattattggcttagacttgagtggtaaatgaaatcacaactgtagttttaa 100  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  40603623 gcaagatcctccacaacgaaactaaattccaatgttattgagtggtaaagattattggcttagacttgagtggtaaatgaaatcacaactctagttttaa 40603722  T
Q  101 tgtactttggaacagaagtattagaactaagaataatnnnnnnnnnnnnnnnnnctgatgattctaagaataatacacagaacaaccaaaatattgtgca 200  Q
    |||||||||||||||||||||||||||||||||||||                 ||||||||||||||||||||||||||||||||||||||||||||||    
T  40603723 tgtactttggaacagaagtattagaactaagaataatgaaaaagaaaaagaaaactgatgattctaagaataatacacagaacaaccaaaatattgtgca 40603822  T
Q  201 ttcagggaaacatgacaatgatgatttcttagaattgaaatacttctcaagggattttacaattacaagtaacctggtcaagccagcaatatttat 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40603823 ttcagggaaacatgacaatgatgatttcttagaattgaaatacttctcaagggattttacaattacaagtaacctggtcaagccagcaatatttat 40603918  T

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