View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17277_high_98 (Length: 307)
Name: NF17277_high_98
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_high_98 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 13 - 291
Target Start/End: Original strand, 26484461 - 26484755
Alignment:
| Q |
13 |
aaaattgcaggcaaagctggaatgcttgatgaaattattaactatgttcagtctcttcaaagacaagtcgaggttagagttctagtcctgtttgatctat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26484461 |
aaaattgcaggcaaagctggaatgcttgatgaaattattaactatgttcagtctcttcaaagacaagtcgaggttagagttctagtcctgtttgatctat |
26484560 |
T |
|
| Q |
113 |
catgttttagtttataatatggtatctattttaagaa----------------taactgaactgtacattatcaccaaatgcagttcttgtcaatgaaat |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26484561 |
catgttttagtttataatatggtatctattttaagaatagtttcaagtccatctaactgaactgtacattatcaccaaatgcagttcttgtcaatgaaat |
26484660 |
T |
|
| Q |
197 |
tagcagctgtaaacccaagacttgacttcaacattgatgaattgtttgccaaagaggtaaggacaatgcaagttgtagaaatttaaggttgtatc |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
26484661 |
tagcagctgtaaacccaagacttgacttcaacattgatgaattgtttgccaaagaggtaaggacaatgcaagttgtagaaatttaaggctgtatc |
26484755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 13 - 86
Target Start/End: Original strand, 54616047 - 54616120
Alignment:
| Q |
13 |
aaaattgcaggcaaagctggaatgcttgatgaaattattaactatgttcagtctcttcaaagacaagtcgaggt |
86 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
54616047 |
aaaattacaggaaaagctggaatgcttgatgaaatcattaactatgttcagtctcttcaaaaacaagttgaggt |
54616120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 236
Target Start/End: Original strand, 54616190 - 54616250
Alignment:
| Q |
176 |
tgcagttcttgtcaatgaaattagcagctgtaaacccaagacttgacttcaacattgatga |
236 |
Q |
| |
|
||||||||||||||||||||||||| |||| || ||||| ||||| ||||| |||||||| |
|
|
| T |
54616190 |
tgcagttcttgtcaatgaaattagctactgtgaatccaaggcttgatttcaatattgatga |
54616250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University