View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_low_104 (Length: 292)
Name: NF17277_low_104
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_low_104 |
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Alignment Details
Target: chr6 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 19 - 271
Target Start/End: Complemental strand, 11308196 - 11307944
Alignment:
| Q |
19 |
cttagctgttagttaggacaacgcataaaatatgcaaagtacgaggttcaaatctcgaacacttaaaatattctgcatgaactacgacgactgaaaacaa |
118 |
Q |
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| T |
11308196 |
cttagctgttagttaggacaacgcataaaatatgcaaagtacgaggtttaaatcccgaacacttaaaatattctgcatgaactacgacgactgaaaacaa |
11308097 |
T |
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| Q |
119 |
aacccttacaaacagtgaaatgaataagtttagaagattttaccataaacagttttggtggcgtttcgagaaaaaccaccaataattttttcagtatcag |
218 |
Q |
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| T |
11308096 |
aacccttacaaacagtgaaatgaataagtttagaagattttaccataaacagttttggtggcgtttcgagaaaaaccaccaataattttttcagtatcag |
11307997 |
T |
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| Q |
219 |
tgaaggaaacagaagaaagcgttgttcctatgatatctacccgatcatgatca |
271 |
Q |
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| T |
11307996 |
tgaaggaaacagaagaaagcgttgttcctatgatatctacccgatcatgatca |
11307944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 16125063 - 16125023
Alignment:
| Q |
36 |
acaacgcataaaatatgcaaagtacgaggttcaaatctcga |
76 |
Q |
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| T |
16125063 |
acaatgcataatatatgcaaagtccgaggttcaaatctcga |
16125023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 744537 - 744592
Alignment:
| Q |
26 |
gttagttaggacaacgcataaaatatgcaaagtacgaggttcaaatctcgaacact |
81 |
Q |
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| T |
744537 |
gttagttaggacaatgcataaaatatgcaaggtatgaggttcaaacctcggacact |
744592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 39054014 - 39054055
Alignment:
| Q |
33 |
aggacaacgcataaaatatgcaaagtacgaggttcaaatctc |
74 |
Q |
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| T |
39054014 |
aggataacgcataaaatatgcaaagtccgcggttcaaatctc |
39054055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 44406917 - 44406858
Alignment:
| Q |
14 |
gtgagcttagct--gttagttaggacaacgcataaaatatgcaaagtacgaggttcaaat |
71 |
Q |
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| T |
44406917 |
gtgagcttagctcagttggttgggacaatgcataaaatatgcaaggtccgaggttcaaat |
44406858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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