View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17277_low_110 (Length: 278)

Name: NF17277_low_110
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17277_low_110
NF17277_low_110
[»] chr1 (4 HSPs)
chr1 (18-273)||(40380111-40380366)
chr1 (18-78)||(40369390-40369450)
chr1 (214-272)||(13620926-13620984)
chr1 (214-272)||(52039716-52039774)
[»] chr4 (1 HSPs)
chr4 (174-272)||(13676287-13676385)
[»] chr6 (1 HSPs)
chr6 (174-272)||(19964333-19964431)
[»] chr3 (1 HSPs)
chr3 (214-272)||(41049014-41049072)
[»] chr7 (1 HSPs)
chr7 (214-272)||(21891304-21891362)
[»] chr5 (1 HSPs)
chr5 (214-272)||(1687387-1687445)


Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 40380366 - 40380111
Alignment:
Q  18 aaagcaggttgcaaatgctaccaatgatgtcgctggtgatggtaagctgttttattcatggttgattatatttttcaaaattaaattgtcacagtttatt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40380366 aaagcaggttgcaaatgctaccaatgatgtcgctggtgatggtaagctgttttattcatggttgattatatttttcaaaattaaattgtcacagtttatt 40380267  T
Q  118 cggatttattcgtgggacgtggttgattcggttttattccaaggacgttgtatatattttagaaatttgttttattcctaggacgtggtatatatgttag 217  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40380266 cggatttattcctgggacgtggttgattcggttttattccaaggacgttgtatatattttagaaatttgttttattcctaggacgtggtatatatgttag 40380167  T
Q  218 aaattaaatctaaatacgttcacatttgaagtgctgatattgtgcattttgtctct 273  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40380166 aaattaaatctaaatacgttcacatttgaagtgctgatattgtgcattttgtctct 40380111  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 40369450 - 40369390
Alignment:
Q  18 aaagcaggttgcaaatgctaccaatgatgtcgctggtgatggtaagctgttttattcatgg 78  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||    
T  40369450 aaagcaggttgctaatgctaccaatgatgtggctggtgatggtaagctgttttatccatgg 40369390  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 214 - 272
Target Start/End: Original strand, 13620926 - 13620984
Alignment:
Q  214 ttagaaattaaatctaaatacgttcacatttgaagtgctgatattgtgcattttgtctc 272  Q
    |||||||||||||||||||| |  |||||||||  ||||||||||||||||||||||||    
T  13620926 ttagaaattaaatctaaataaggccacatttgacatgctgatattgtgcattttgtctc 13620984  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 214 - 272
Target Start/End: Complemental strand, 52039774 - 52039716
Alignment:
Q  214 ttagaaattaaatctaaatacgttcacatttgaagtgctgatattgtgcattttgtctc 272  Q
    |||||||||||||||||||| |  |||||||||  ||||||||||||||||||||||||    
T  52039774 ttagaaattaaatctaaataaggccacatttgacatgctgatattgtgcattttgtctc 52039716  T

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Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 174 - 272
Target Start/End: Complemental strand, 13676385 - 13676287
Alignment:
Q  174 ttttagaaatttgttttattcctaggacgtggtatatatgttagaaattaaatctaaatacgttcacatttgaagtgctgatattgtgcattttgtctc 272  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||  |||||||||  |||||||||||| |||||||||||    
T  13676385 ttttagaaatttgttttattcctaggacgcggtatatatgttagaaattaaatgtaaatacggccacatttgacatgctgatattgtacattttgtctc 13676287  T

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Target: chr6 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 174 - 272
Target Start/End: Original strand, 19964333 - 19964431
Alignment:
Q  174 ttttagaaatttgttttattcctaggacgtggtatatatgttagaaattaaatctaaatacgttcacatttgaagtgctgatattgtgcattttgtctc 272  Q
    |||||||  ||| |||||||||||||||| ||||||||||||||||||||||| ||||||||  |||||||||  |||||||||||| |||||||||||    
T  19964333 ttttagattttttttttattcctaggacgcggtatatatgttagaaattaaatgtaaatacggccacatttgacatgctgatattgtacattttgtctc 19964431  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 214 - 272
Target Start/End: Original strand, 41049014 - 41049072
Alignment:
Q  214 ttagaaattaaatctaaatacgttcacatttgaagtgctgatattgtgcattttgtctc 272  Q
    ||||||||||||||||||||||  |||||||||  ||||||||||||||||||||||||    
T  41049014 ttagaaattaaatctaaatacggccacatttgacatgctgatattgtgcattttgtctc 41049072  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 214 - 272
Target Start/End: Complemental strand, 21891362 - 21891304
Alignment:
Q  214 ttagaaattaaatctaaatacgttcacatttgaagtgctgatattgtgcattttgtctc 272  Q
    ||||||||||||||||||||||  |||||||||   |||||||||||||||||||||||    
T  21891362 ttagaaattaaatctaaatacggccacatttgacaagctgatattgtgcattttgtctc 21891304  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 214 - 272
Target Start/End: Complemental strand, 1687445 - 1687387
Alignment:
Q  214 ttagaaattaaatctaaatacgttcacatttgaagtgctgatattgtgcattttgtctc 272  Q
    |||||||||||||||||||| |  |||||||||  ||||||||||||||||||||||||    
T  1687445 ttagaaattaaatctaaataaggccacatttgacatgctgatattgtgcattttgtctc 1687387  T

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