View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17277_low_112 (Length: 273)

Name: NF17277_low_112
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17277_low_112
NF17277_low_112
[»] chr8 (4 HSPs)
chr8 (9-259)||(21236095-21236345)
chr8 (68-109)||(17642950-17642991)
chr8 (67-115)||(17635665-17635713)
chr8 (69-109)||(32151969-32152009)
[»] chr4 (6 HSPs)
chr4 (9-196)||(571271-571458)
chr4 (68-115)||(55907684-55907731)
chr4 (67-117)||(553758-553808)
chr4 (76-110)||(1547717-1547751)
chr4 (68-114)||(3437630-3437676)
chr4 (9-103)||(7225182-7225275)
[»] chr1 (1 HSPs)
chr1 (9-117)||(7555139-7555247)
[»] chr2 (1 HSPs)
chr2 (68-115)||(1036620-1036667)
[»] chr6 (7 HSPs)
chr6 (68-117)||(7132305-7132354)
chr6 (68-117)||(7135228-7135277)
chr6 (68-117)||(7138151-7138200)
chr6 (70-108)||(6395539-6395577)
chr6 (68-117)||(7993556-7993605)
chr6 (68-132)||(6417092-6417156)
chr6 (70-126)||(6427183-6427239)
[»] chr5 (1 HSPs)
chr5 (67-112)||(20477452-20477497)
[»] chr7 (1 HSPs)
chr7 (68-115)||(10615713-10615760)


Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 9 - 259
Target Start/End: Original strand, 21236095 - 21236345
Alignment:
Q  9 agcaaagggaaacagtccgagatgagcaacaagtcggtggtactgatagaatccttgtaggaacaattgagagatgtcaaagttgtaatattttgggaga 108  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  21236095 agcaaagagaaacagtccgagatgagcaactagtcggtggtactgatagaatccttgtaggaacaattgagagatgtcaaagttgtagtattttgggaga 21236194  T
Q  109 atgctcgcagcccgtttaagggaatcaaggcgctgttggcgagattgagcgatgtgatgttcaatggaaaagatgagatttcagtgagaagagtgttgcg 208  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||| || |||||||||||||||||| |||||||||    
T  21236195 atgctcgcagcccgtttaagggaatcaaggcgctgttagcgaaattgagcaatgtgatgttcaatggataacatgagatttcagtgagaaaagtgttgcg 21236294  T
Q  209 gtcaaccttgtggttaccacgaaatcgcgagaggtcgagcgaggtgagatt 259  Q
    ||||||| ||| ||||||||||||||| |||||||||||||| ||||||||    
T  21236295 gtcaaccctgtagttaccacgaaatcgtgagaggtcgagcgatgtgagatt 21236345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 68 - 109
Target Start/End: Complemental strand, 17642991 - 17642950
Alignment:
Q  68 ggaacaattgagagatgtcaaagttgtaatattttgggagaa 109  Q
    ||||||| ||||||| ||||||||||||||||| ||||||||    
T  17642991 ggaacaagtgagagaggtcaaagttgtaatattctgggagaa 17642950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 115
Target Start/End: Complemental strand, 17635713 - 17635665
Alignment:
Q  67 aggaacaattgagagatgtcaaagttgtaatattttgggagaatgctcg 115  Q
    |||||||| ||||||| |||||||||||||||||  ||||||| |||||    
T  17635713 aggaacaagtgagagaggtcaaagttgtaatattccgggagaaagctcg 17635665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 32151969 - 32152009
Alignment:
Q  69 gaacaattgagagatgtcaaagttgtaatattttgggagaa 109  Q
    |||||| ||||||| |||||||||||||| |||||||||||    
T  32151969 gaacaagtgagagaggtcaaagttgtaatgttttgggagaa 32152009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 9 - 196
Target Start/End: Original strand, 571271 - 571458
Alignment:
Q  9 agcaaagggaaacagtccgagatgagcaacaagtcggtggtactgatagaatccttgtaggaacaattgagagatgtcaaagttgtaatattttgggaga 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  571271 agcaaagggaaacagtccgagatgagcaacaagtcggtggtactgatagaatccttgtaggaacaattgagagatgtcaaagttgtaatattttgggaga 571370  T
Q  109 atgctcgcagcccgtttaagggaatcaaggcgctgttggcgagattgagcgatgtgatgttcaatggaaaagatgagatttcagtgag 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  571371 atgctcgcagcccgtttaagggaatcaaggcgctgttggcgagattgagcgatgtgatgttcaatggaaaagatgagatttcagtgag 571458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 115
Target Start/End: Complemental strand, 55907731 - 55907684
Alignment:
Q  68 ggaacaattgagagatgtcaaagttgtaatattttgggagaatgctcg 115  Q
    ||||||| |||||||  ||||||||||||||||||||||||| |||||    
T  55907731 ggaacaaatgagagaattcaaagttgtaatattttgggagaaagctcg 55907684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 117
Target Start/End: Original strand, 553758 - 553808
Alignment:
Q  67 aggaacaattgagagatgtcaaagttgtaatattttgggagaatgctcgca 117  Q
    |||||||  ||||||| |||||||||||||| ||||||||||| |||||||    
T  553758 aggaacaggtgagagaggtcaaagttgtaatgttttgggagaaagctcgca 553808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 110
Target Start/End: Complemental strand, 1547751 - 1547717
Alignment:
Q  76 tgagagatgtcaaagttgtaatattttgggagaat 110  Q
    |||||||||||||||||||||| ||||||||||||    
T  1547751 tgagagatgtcaaagttgtaatgttttgggagaat 1547717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 3437676 - 3437630
Alignment:
Q  68 ggaacaattgagagatgtcaaagttgtaatattttgggagaatgctc 114  Q
    ||||||| ||||||| |||||||||||||| ||||||||||| ||||    
T  3437676 ggaacaactgagagaggtcaaagttgtaatcttttgggagaaagctc 3437630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 103
Target Start/End: Complemental strand, 7225275 - 7225182
Alignment:
Q  9 agcaaagggaaacagtccgagatgagcaacaagtcggtggtactgatagaatccttgtaggaacaattgagagatgtcaaagttgtaatattttg 103  Q
    |||||||||||||| |||| |||||| |||| ||| ||| || ||| |||||   ||| ||||||  ||||||| ||||||||||||||||||||    
T  7225275 agcaaagggaaacaatccgcgatgaggaacatgtcagtgctagtgacagaataaatgt-ggaacatgtgagagaggtcaaagttgtaatattttg 7225182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 117
Target Start/End: Original strand, 7555139 - 7555247
Alignment:
Q  9 agcaaagggaaacagtccgagatgagcaacaagtcggtggtactgatagaatccttgtaggaacaattgagagatgtcaaagttgtaatattttgggaga 108  Q
    |||||||||||||| || |  ||||| ||||||||  || || ||||||||||| | | ||||||| |||| || || ||||||||||||||||||||||    
T  7555139 agcaaagggaaacattcagcaatgagtaacaagtcattgctattgatagaatccattttggaacaagtgagtgaggttaaagttgtaatattttgggaga 7555238  T
Q  109 atgctcgca 117  Q
    | |||||||    
T  7555239 aagctcgca 7555247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 115
Target Start/End: Complemental strand, 1036667 - 1036620
Alignment:
Q  68 ggaacaattgagagatgtcaaagttgtaatattttgggagaatgctcg 115  Q
    ||||||| ||||||| |||||||||||||||||||||||||| |||||    
T  1036667 ggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcg 1036620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 7132305 - 7132354
Alignment:
Q  68 ggaacaattgagagatgtcaaagttgtaatattttgggagaatgctcgca 117  Q
    |||||||| |||||||| |||||||||||| ||||||||||| |||||||    
T  7132305 ggaacaatcgagagatgccaaagttgtaatgttttgggagaaagctcgca 7132354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 7135228 - 7135277
Alignment:
Q  68 ggaacaattgagagatgtcaaagttgtaatattttgggagaatgctcgca 117  Q
    |||||||| |||||||| |||||||||||| ||||||||||| |||||||    
T  7135228 ggaacaatcgagagatgccaaagttgtaatgttttgggagaaagctcgca 7135277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 7138151 - 7138200
Alignment:
Q  68 ggaacaattgagagatgtcaaagttgtaatattttgggagaatgctcgca 117  Q
    |||||||| |||||||| |||||||||||| ||||||||||| |||||||    
T  7138151 ggaacaatcgagagatgccaaagttgtaatgttttgggagaaagctcgca 7138200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 108
Target Start/End: Original strand, 6395539 - 6395577
Alignment:
Q  70 aacaattgagagatgtcaaagttgtaatattttgggaga 108  Q
    ||||| ||||||| |||||||||||||||||||||||||    
T  6395539 aacaactgagagaggtcaaagttgtaatattttgggaga 6395577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 68 - 117
Target Start/End: Complemental strand, 7993605 - 7993556
Alignment:
Q  68 ggaacaattgagagatgtcaaagttgtaatattttgggagaatgctcgca 117  Q
    ||||||||||||||| |||||| ||||||| |||||||  ||||||||||    
T  7993605 ggaacaattgagagaggtcaaaattgtaatgttttgggcaaatgctcgca 7993556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 132
Target Start/End: Original strand, 6417092 - 6417156
Alignment:
Q  68 ggaacaattgagagatgtcaaagttgtaatattttgggagaatgctcgcagcccgtttaagggaa 132  Q
    ||||||| ||||||| |||||||||||| | ||||||||||| ||||| | ||| |||| |||||    
T  6417092 ggaacaagtgagagaggtcaaagttgtattcttttgggagaaagctcgtaacccatttacgggaa 6417156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 126
Target Start/End: Original strand, 6427183 - 6427239
Alignment:
Q  70 aacaattgagagatgtcaaagttgtaatattttgggagaatgctcgcagcccgttta 126  Q
    ||||| ||||| | ||||||||||||||||||||||||||  || ||| ||||||||    
T  6427183 aacaagtgagaaaggtcaaagttgtaatattttgggagaaaacttgcaacccgttta 6427239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 112
Target Start/End: Complemental strand, 20477497 - 20477452
Alignment:
Q  67 aggaacaattgagagatgtcaaagttgtaatattttgggagaatgc 112  Q
    |||||||| ||||||| ||||||||| |||||||||||||||||||    
T  20477497 aggaacaactgagagaggtcaaagttttaatattttgggagaatgc 20477452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 115
Target Start/End: Original strand, 10615713 - 10615760
Alignment:
Q  68 ggaacaattgagagatgtcaaagttgtaatattttgggagaatgctcg 115  Q
    ||||||| ||||||| |||||||||||||| ||||||||||| |||||    
T  10615713 ggaacaagtgagagaggtcaaagttgtaatcttttgggagaaagctcg 10615760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University