View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_low_113 (Length: 271)
Name: NF17277_low_113
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_low_113 |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 1e-90; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 11 - 229
Target Start/End: Original strand, 219334 - 219550
Alignment:
| Q |
11 |
atgaacctcatcgtggatgaaattatgttttatgcatctcagattactctttctacttctactactactactattactcatcaagatgcttgggttttgg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
219334 |
atgaacctcatcgtggatgaaattatgttttatgcatctcagattactctttctacttctac---tactactactactcatcaagatgcttgggttttgg |
219430 |
T |
|
| Q |
111 |
acgtggacgacacttgtatctctaatattccttattataaagctaagcgatttgggtatgtttctttctttctttcgta-nnnnnnnattatatgttaga |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
219431 |
acgtggacgacacttgtatctctaatattccttattataaagctaaacgatttgggtatgtttctttctttctttcgtattttttttattatatgttaga |
219530 |
T |
|
| Q |
210 |
cttggggcacacaatttgaa |
229 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
219531 |
cttggggcacacaatttgaa |
219550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 11 - 229
Target Start/End: Original strand, 695894 - 696110
Alignment:
| Q |
11 |
atgaacctcatcgtggatgaaattatgttttatgcatctcagattactctttctacttctactactactactattactcatcaagatgcttgggttttgg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
695894 |
atgaacctcatcgtggatgaaattatgttttatgcatctcagattactctttctacttctac---tactactactactcatcaagatgcttgggttttgg |
695990 |
T |
|
| Q |
111 |
acgtggacgacacttgtatctctaatattccttattataaagctaagcgatttgggtatgtttctttctttctttcgta-nnnnnnnattatatgttaga |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
695991 |
acgtggacgacacttgtatctctaatattccttattataaagctaaacgatttgggtatgtttctttctttctttcgtattttttttattatatgttaga |
696090 |
T |
|
| Q |
210 |
cttggggcacacaatttgaa |
229 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
696091 |
cttggggcacacaatttgaa |
696110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 11 - 229
Target Start/End: Original strand, 732957 - 733173
Alignment:
| Q |
11 |
atgaacctcatcgtggatgaaattatgttttatgcatctcagattactctttctacttctactactactactattactcatcaagatgcttgggttttgg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
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|
| T |
732957 |
atgaacctcatcgtggatgaaattatgttttatgcatctcagattactctttctacttctac---tactactactactcatcaagatgcttgggttttgg |
733053 |
T |
|
| Q |
111 |
acgtggacgacacttgtatctctaatattccttattataaagctaagcgatttgggtatgtttctttctttctttcgta-nnnnnnnattatatgttaga |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
733054 |
acgtggacgacacttgtatctctaatattccttattataaagctaaacgatttgggtatgtttctttctttctttcgtattttttttattatatgttaga |
733153 |
T |
|
| Q |
210 |
cttggggcacacaatttgaa |
229 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
733154 |
cttggggcacacaatttgaa |
733173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 11 - 229
Target Start/End: Original strand, 856853 - 857069
Alignment:
| Q |
11 |
atgaacctcatcgtggatgaaattatgttttatgcatctcagattactctttctacttctactactactactattactcatcaagatgcttgggttttgg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
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|
| T |
856853 |
atgaacctcatcgtggatgaaattatgttttatgcatctcagattactctttctacttctac---tactactactactcatcaagatgcttgggttttgg |
856949 |
T |
|
| Q |
111 |
acgtggacgacacttgtatctctaatattccttattataaagctaagcgatttgggtatgtttctttctttctttcgta-nnnnnnnattatatgttaga |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
856950 |
acgtggacgacacttgtatctctaatattccttattataaagctaaacgatttgggtatgtttctttctttctttcgtattttttttattatatgttaga |
857049 |
T |
|
| Q |
210 |
cttggggcacacaatttgaa |
229 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
857050 |
cttggggcacacaatttgaa |
857069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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