View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17277_low_117 (Length: 266)
Name: NF17277_low_117
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_low_117 |
 | |
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| [»] scaffold0496 (1 HSPs) |
| | |
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| [»] scaffold1330 (1 HSPs) |
| | |
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| [»] scaffold0345 (1 HSPs) |
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| [»] scaffold0105 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 21 - 254
Target Start/End: Complemental strand, 7458120 - 7457887
Alignment:
| Q |
21 |
atacaatacattttttacaactgcaatcaaaggaggtggtccataagatggtggtgcctccaatactccagttggcactgggaacatgttgggtatttca |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
7458120 |
atacaatacattttttacaactgcaatcaagggaggtggtccataagatggtggtgcctccaatactccagttggcattgggaacatgttgggtatttca |
7458021 |
T |
|
| Q |
121 |
cgccattcttttctctttatatcaaattcctcaccacatgtaagtggtgttgttttatcagctccaattccaccaaggacataaaattttccatccataa |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
7458020 |
cgccattcttttctctttatatcaaattcctcaccacatgtaagtggtgttgttttatcagctccaattccaccaaggacataaaatttttcatccataa |
7457921 |
T |
|
| Q |
221 |
atacacccgaacacatttttcttgctttattcat |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
7457920 |
atacacccgaacacatttttcttgctttattcat |
7457887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 21 - 254
Target Start/End: Complemental strand, 7412041 - 7411808
Alignment:
| Q |
21 |
atacaatacattttttacaactgcaatcaaaggaggtggtccataagatggtggtgcctccaatactccagttggcactgggaacatgttgggtatttca |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
7412041 |
atacaatacattttttacaactgcaatcaagggaggtggtccataagatggtggtgcctccaatactccagttggcattgggaacatgttgggtatttca |
7411942 |
T |
|
| Q |
121 |
cgccattcttttctctttatatcaaattcctcaccacatgtaagtggtgttgttttatcagctccaattccaccaaggacataaaattttccatccataa |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
7411941 |
cgccattcttttctctttatatcaaattcctcaccacatgtaagtggtgttgttttatcagctccaattccaccaaggacataaaatttttcatccataa |
7411842 |
T |
|
| Q |
221 |
atacacccgaacacatttttcttgctttattcat |
254 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |
|
|
| T |
7411841 |
atacaccccaacacatttttcttgctttattcat |
7411808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 221
Target Start/End: Complemental strand, 44920056 - 44919976
Alignment:
| Q |
141 |
atcaaattcctcaccacatgtaagtggtgttgttttatcagctccaattccaccaaggacataaaattttccatccataaa |
221 |
Q |
| |
|
|||||| || |||||||| || ||| |||||||||| ||| |||||| ||| |||||||||||||||||| |||||||||| |
|
|
| T |
44920056 |
atcaaactcttcaccacaagttagttgtgttgttttgtcaactccaactccgccaaggacataaaatttttcatccataaa |
44919976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 44920184 - 44920148
Alignment:
| Q |
22 |
tacaatacattttttacaactgcaatcaaaggaggtg |
58 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||| |
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|
| T |
44920184 |
tacaatacatcttttacaactgcaattaaaggaggtg |
44920148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0496 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: scaffold0496
Description:
Target: scaffold0496; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 20 - 254
Target Start/End: Complemental strand, 2970 - 2736
Alignment:
| Q |
20 |
catacaatacattttttacaactgcaatcaaaggaggtggtccataagatggtggtgcctccaatactccagttggcactgggaacatgttgggtatttc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| ||| |||| ||||||| ||| | ||||||||| | ||||||| ||||||||||||||| |
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|
| T |
2970 |
catacaatacattttttacaactgcaatcaagggaggtgacccaaaagaaggtggtgtctcagacactccagttcgtactgggagcatgttgggtatttc |
2871 |
T |
|
| Q |
120 |
acgccattcttttctctttatatcaaattcctcaccacatgtaagtggtgttgttttatcagctccaattccaccaaggacataaaattttccatccata |
219 |
Q |
| |
|
|||||||| ||| ||||||||||||| |||||||||||||||||| ||||| |||| |||||| | || ||||||||||| |||||||||||||||||| |
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|
| T |
2870 |
acgccattttttattctttatatcaaactcctcaccacatgtaagttgtgtttttttgtcagctgctatcccaccaaggacgtaaaattttccatccata |
2771 |
T |
|
| Q |
220 |
aatacacccgaacacatttttcttgctttattcat |
254 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |
|
|
| T |
2770 |
aatacacttgaacacatttttcttgctttattcat |
2736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1330 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: scaffold1330
Description:
Target: scaffold1330; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 20 - 254
Target Start/End: Complemental strand, 1772 - 1538
Alignment:
| Q |
20 |
catacaatacattttttacaactgcaatcaaaggaggtggtccataagatggtggtgcctccaatactccagttggcactgggaacatgttgggtatttc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||| ||| || ||||||||| | || ||||||||||| |||||||| |
|
|
| T |
1772 |
catacaatacattttttacaactgcaatcaaaggaggtgacccaaaagaaggtggtgtctcaaacactccagttcgtacggggaacatgttaggtatttc |
1673 |
T |
|
| Q |
120 |
acgccattcttttctctttatatcaaattcctcaccacatgtaagtggtgttgttttatcagctccaattccaccaaggacataaaattttccatccata |
219 |
Q |
| |
|
|||||||| |||| |||| |||||||| ||||| ||||||||||| ||||| |||| |||||| | || ||||||||||||||||||||||||||||| |
|
|
| T |
1672 |
acgccatttttttgtcttcatatcaaactcctccccacatgtaagctgtgtttttttgtcagctgctatcccaccaaggacataaaattttccatccatg |
1573 |
T |
|
| Q |
220 |
aatacacccgaacacatttttcttgctttattcat |
254 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |
|
|
| T |
1572 |
aatacacttgaacacatttttcttgctttattcat |
1538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 20 - 254
Target Start/End: Original strand, 3606 - 3840
Alignment:
| Q |
20 |
catacaatacattttttacaactgcaatcaaaggaggtggtccataagatggtggtgcctccaatactccagttggcactgggaacatgttgggtatttc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||| ||| || ||||||||| | || ||||||||||| |||||||| |
|
|
| T |
3606 |
catacaatacattttttacaactgcaatcaaaggaggtgacccaaaagaaggtggtgtctcaaacactccagttcgtacggggaacatgttaggtatttc |
3705 |
T |
|
| Q |
120 |
acgccattcttttctctttatatcaaattcctcaccacatgtaagtggtgttgttttatcagctccaattccaccaaggacataaaattttccatccata |
219 |
Q |
| |
|
|||||||| |||| |||| |||||||| ||||| ||||||||||| ||||| |||| |||||| | || ||||||||||||||||||||||||||||| |
|
|
| T |
3706 |
acgccatttttttgtcttcatatcaaactcctccccacatgtaagctgtgtttttttgtcagctgctatcccaccaaggacataaaattttccatccatg |
3805 |
T |
|
| Q |
220 |
aatacacccgaacacatttttcttgctttattcat |
254 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |
|
|
| T |
3806 |
aatacacttgaacacatttttcttgctttattcat |
3840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 131; Significance: 5e-68; HSPs: 4)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 20 - 254
Target Start/End: Original strand, 3719 - 3953
Alignment:
| Q |
20 |
catacaatacattttttacaactgcaatcaaaggaggtggtccataagatggtggtgcctccaatactccagttggcactgggaacatgttgggtatttc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||| ||| || ||||||||| | || ||||||||||| |||||||| |
|
|
| T |
3719 |
catacaatacattttttacaactgcaatcaaaggaggtgacccaaaagaaggtggtgtctcaaacactccagttcgtacggggaacatgttaggtatttc |
3818 |
T |
|
| Q |
120 |
acgccattcttttctctttatatcaaattcctcaccacatgtaagtggtgttgttttatcagctccaattccaccaaggacataaaattttccatccata |
219 |
Q |
| |
|
|||||||| |||| |||| |||||||| ||||| ||||||||||| ||||| |||| |||||| | || ||||||||||||||||||||||||||||| |
|
|
| T |
3819 |
acgccatttttttgtcttcatatcaaactcctccccacatgtaagctgtgtttttttgtcagctgctatcccaccaaggacataaaattttccatccatg |
3918 |
T |
|
| Q |
220 |
aatacacccgaacacatttttcttgctttattcat |
254 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |
|
|
| T |
3919 |
aatacacttgaacacatttttcttgctttattcat |
3953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 20 - 254
Target Start/End: Original strand, 9801 - 10035
Alignment:
| Q |
20 |
catacaatacattttttacaactgcaatcaaaggaggtggtccataagatggtggtgcctccaatactccagttggcactgggaacatgttgggtatttc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||| ||| || ||||||||| | || ||||||||||| |||||||| |
|
|
| T |
9801 |
catacaatacattttttacaactgcaatcaaaggaggtgacccaaaagaaggtggtgtctcaaacactccagttcgtacggggaacatgttaggtatttc |
9900 |
T |
|
| Q |
120 |
acgccattcttttctctttatatcaaattcctcaccacatgtaagtggtgttgttttatcagctccaattccaccaaggacataaaattttccatccata |
219 |
Q |
| |
|
|||||||| |||| |||| |||||||| ||||| ||||||||||| ||||| |||| |||||| | || ||||||||||||||||||||||||||||| |
|
|
| T |
9901 |
acgccatttttttgtcttcatatcaaactcctccccacatgtaagctgtgtttttttgtcagctgctatcccaccaaggacataaaattttccatccatg |
10000 |
T |
|
| Q |
220 |
aatacacccgaacacatttttcttgctttattcat |
254 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |
|
|
| T |
10001 |
aatacacttgaacacatttttcttgctttattcat |
10035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 20 - 254
Target Start/End: Complemental strand, 48973 - 48739
Alignment:
| Q |
20 |
catacaatacattttttacaactgcaatcaaaggaggtggtccataagatggtggtgcctccaatactccagttggcactgggaacatgttgggtatttc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||| ||| || ||||||||| | || ||||||||||| |||||||| |
|
|
| T |
48973 |
catacaatacattttttacaactgcaatcaaaggaggtgacccaaaagaaggtggtgtctcaaacactccagttcgtacggggaacatgttaggtatttc |
48874 |
T |
|
| Q |
120 |
acgccattcttttctctttatatcaaattcctcaccacatgtaagtggtgttgttttatcagctccaattccaccaaggacataaaattttccatccata |
219 |
Q |
| |
|
|||||||| |||| |||| |||||||| ||||| ||||||||||| ||||| |||| |||||| | || ||||||||||||||||||||||||||||| |
|
|
| T |
48873 |
acgccatttttttgtcttcatatcaaactcctccccacatgtaagctgtgtttttttttcagctgctatcccaccaaggacataaaattttccatccatg |
48774 |
T |
|
| Q |
220 |
aatacacccgaacacatttttcttgctttattcat |
254 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |
|
|
| T |
48773 |
aatacacttgaacacatttttcttgctttattcat |
48739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 20 - 254
Target Start/End: Complemental strand, 35373 - 35139
Alignment:
| Q |
20 |
catacaatacattttttacaactgcaatcaaaggaggtggtccataagatggtggtgcctccaatactccagttggcactgggaacatgttgggtatttc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||| ||| || ||||||||| | || ||||||||||| |||||||| |
|
|
| T |
35373 |
catacaatacattttttacaactgcaatcaaaggaggtgacccaaaagaaggtggtgtctcaaacactccagttcgtacggggaacatgttaggtatttc |
35274 |
T |
|
| Q |
120 |
acgccattcttttctctttatatcaaattcctcaccacatgtaagtggtgttgttttatcagctccaattccaccaaggacataaaattttccatccata |
219 |
Q |
| |
|
|| ||||| |||| |||| |||||||| ||||| ||||||||||| ||||| |||| |||||| | || ||||||||||||||||||||||||||||| |
|
|
| T |
35273 |
acaccatttttttgtcttcatatcaaactcctccccacatgtaagctgtgtttttttgtcagctgctatcccaccaaggacataaaattttccatccatg |
35174 |
T |
|
| Q |
220 |
aatacacccgaacacatttttcttgctttattcat |
254 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |
|
|
| T |
35173 |
aatacacttgaacacatttttcttgctttattcat |
35139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 254
Target Start/End: Complemental strand, 17356675 - 17356620
Alignment:
| Q |
199 |
acataaaattttccatccataaatacacccgaacacatttttcttgctttattcat |
254 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||| || || | ||||||||| |
|
|
| T |
17356675 |
acataaaattttccatccatgaatacaccagaacacatcttcctcggtttattcat |
17356620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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