View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_low_120 (Length: 263)
Name: NF17277_low_120
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_low_120 |
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Alignment Details
Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 148 - 253
Target Start/End: Original strand, 29463373 - 29463477
Alignment:
| Q |
148 |
aaacggctcatataatgatactcaatgtgttggtcgcttaggaatcatttgaaaaggtgttccattatgcatcagtttacccttcaaggaaagtaggata |
247 |
Q |
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| T |
29463373 |
aaacagctcatataat-atactcaatgtgttggtcgcttaggaatcatttgaaaaggtgttccattatgcatcagtttacccttcaagtaaagtaggata |
29463471 |
T |
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| Q |
248 |
cctatg |
253 |
Q |
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|||||| |
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| T |
29463472 |
cctatg |
29463477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 38 - 115
Target Start/End: Original strand, 29462955 - 29463031
Alignment:
| Q |
38 |
acatttggcttcttaaaaaagaataactttctctccggttagtcctttcatcaaaggatgaactaagtttttaagagt |
115 |
Q |
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| T |
29462955 |
acatttggcttcttaaaaaagaataa-tttctctccggttagtcctttcatcaaaggatgaactaagtttttaagagt |
29463031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 29462882 - 29462921
Alignment:
| Q |
1 |
ccaacatttcttaccaaaatgaacaaaatatatcacgaca |
40 |
Q |
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| T |
29462882 |
ccaacatttcttaccaaaatgaacaaaatatatcacgaca |
29462921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 108
Target Start/End: Original strand, 32011650 - 32011695
Alignment:
| Q |
63 |
actttctctccggttagtcctttcatcaaaggatgaactaagtttt |
108 |
Q |
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| T |
32011650 |
actttctctctgtttagtcctttcatcaaaggatcagctaagtttt |
32011695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 108
Target Start/End: Complemental strand, 37408559 - 37408514
Alignment:
| Q |
63 |
actttctctccggttagtcctttcatcaaaggatgaactaagtttt |
108 |
Q |
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|||||||||| | ||||||||||| ||||||||| ||||||||||| |
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| T |
37408559 |
actttctctctgtttagtcctttcgtcaaaggatcaactaagtttt |
37408514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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