View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_low_121 (Length: 262)
Name: NF17277_low_121
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_low_121 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 15 - 245
Target Start/End: Complemental strand, 42006208 - 42005978
Alignment:
| Q |
15 |
atcatcatccaagctcaccttcatcacatgcttaacctcctccccattaacagaagtatccaagccattttcagacttcatggaaacagggaaaaagtcc |
114 |
Q |
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| T |
42006208 |
atcatcatccaagctcaccttcatcacatgcttaacctcctccccattaacagaagtatccaagccattttcagacttcatggaaacagggaaaaagtcc |
42006109 |
T |
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| Q |
115 |
acacactcccacataccggtgccaggaacagcgtcaagcaaatcctctttacgctcataggtcttgaagtccactgtgtcgtaaaccaaagcaacgccag |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42006108 |
acacactcccacataccggtgccaggaacagcgtcaagcaaatcctctttacgctcataggtcttgaagtccactgtgtcgtaaaccaaagcaacgccag |
42006009 |
T |
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| Q |
215 |
ttttgttaatcttggagcctatggtgattct |
245 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
42006008 |
ttttgttaatcttggagcctatggtgattct |
42005978 |
T |
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