View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17277_low_122 (Length: 262)
Name: NF17277_low_122
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_low_122 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 19 - 252
Target Start/End: Complemental strand, 41438916 - 41438683
Alignment:
| Q |
19 |
agcttcctcctggtagttctgacacagcaattgaagtggttgatgggaatttttcttgggatttatctttgcctagtccaactttgcagaacataaatct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41438916 |
agcttcctcctggtagttctgacacagcaattgaagtggtggatgggaatttttcttgggatttatctttgcctagtccaactttgcagaacataaatct |
41438817 |
T |
|
| Q |
119 |
caaagtttctcatggcatgaaggttgctgtttgtggtactgttggatcaggaaagtctactttactttcttgtgtattgggagaagtaccgaagatatca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41438816 |
caaagtttctcatggcatgaaggttgctgtttgtggtactgttggatcaggaaagtctactttactttcttgtgtattgggagaagtaccgaagatatca |
41438717 |
T |
|
| Q |
219 |
ggggtccttaaggtttgtggaaaaaaggcctatg |
252 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| |
|
|
| T |
41438716 |
ggcgtccttaaggtttgtggaaaaaaggcctatg |
41438683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 252
Target Start/End: Complemental strand, 41452085 - 41451852
Alignment:
| Q |
19 |
agcttcctcctggtagttctgacacagcaattgaagtggttgatgggaatttttcttgggatttatctttgcctagtccaactttgcagaacataaatct |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41452085 |
agcttcctcctggtagttctgacacagcaattgaagtggttgatgggaatttttcttgggagttatctttgcctagtccaactttgcagaacataaatct |
41451986 |
T |
|
| Q |
119 |
caaagtttctcatggcatgaaggttgctgtttgtggtactgttggatcaggaaagtctactttactttcttgtgtattgggagaagtaccgaagatatca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41451985 |
caaagtttctcatggcatgaaggttgctgtttgtggtactgttggatcaggaaagtctactttactttcttgtgtattgggagaagtaccgaagatatca |
41451886 |
T |
|
| Q |
219 |
ggggtccttaaggtttgtggaaaaaaggcctatg |
252 |
Q |
| |
|
|| ||||||||||||||||||| ||||||||||| |
|
|
| T |
41451885 |
ggcgtccttaaggtttgtggaacaaaggcctatg |
41451852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 250
Target Start/End: Complemental strand, 14241076 - 14240845
Alignment:
| Q |
19 |
agcttcctcctggtagttctgacacagcaattgaagtggttgatgggaatttttcttgggatttatctttgcctagtccaactttgcagaacataaatct |
118 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
14241076 |
agcttcctcctggtagttctgatacagcaattgaagtggttgatgggaatttttcttgggatttatcttcgcctagtccaactgtgcagaacataaatct |
14240977 |
T |
|
| Q |
119 |
caaagtttctcatggcatgaaggttgctgtttgtggtactgttggatcaggaaagtctactttactttcttgtgtattgggagaagtaccgaagatatca |
218 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
14240976 |
caaagtttttcatggcatgaaggttgctgtttgtggtactgttggatcaggaaagtctactttactttcttgtgtactgggagaagtaccaaagatatca |
14240877 |
T |
|
| Q |
219 |
ggggtccttaaggtttgtggaaaaaaggccta |
250 |
Q |
| |
|
|| || |||||||||||||| |||||||||| |
|
|
| T |
14240876 |
ggcgttgttaaggtttgtggagaaaaggccta |
14240845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 19 - 252
Target Start/End: Original strand, 14372282 - 14372515
Alignment:
| Q |
19 |
agcttcctcctggtagttctgacacagcaattgaagtggttgatgggaatttttcttgggatttatctttgcctagtccaactttgcagaacataaatct |
118 |
Q |
| |
|
|||||||||| ||||||||||| || ||||||||||||||| |||||||||||||||| |||||||||| || | |||||||||||||||| |||| || |
|
|
| T |
14372282 |
agcttcctccgggtagttctgatactgcaattgaagtggttaatgggaatttttcttgtgatttatcttcacccaatccaactttgcagaacgtaaacct |
14372381 |
T |
|
| Q |
119 |
caaagtttctcatggcatgaaggttgctgtttgtggtactgttggatcaggaaagtctactttactttcttgtgtattgggagaagtaccgaagatatca |
218 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
14372382 |
caaagtttttcatggcatgaaggttgctgtttgtggtactgttggatcaggcaagtctactttactttcatgtgtattgggagaagtaccaaagatatca |
14372481 |
T |
|
| Q |
219 |
ggggtccttaaggtttgtggaaaaaaggcctatg |
252 |
Q |
| |
|
|| ||||||| |||||||||| ||||||||||| |
|
|
| T |
14372482 |
ggcatccttaaagtttgtggaacaaaggcctatg |
14372515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 8e-36; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 30 - 217
Target Start/End: Original strand, 22739520 - 22739707
Alignment:
| Q |
30 |
ggtagttctgacacagcaattgaagtggttgatgggaatttttcttgggatttatctt-tgcctagtccaactttgcagaacataaatctcaaagtttct |
128 |
Q |
| |
|
||||||||||||| |||||||||| | || ||||| ||||| |||||||||||||||| |||| | | |||| ||| | ||||||||||| | ||||| | |
|
|
| T |
22739520 |
ggtagttctgacatagcaattgaaatagtagatggaaatttctcttgggatttatcttctgccaa-tacaacattgaaaaacataaatcttagagttttt |
22739618 |
T |
|
| Q |
129 |
catggcatgaaggttgctgtttgtggtactgttggatcaggaaagtctactttactttcttgtgtattgggagaagtaccgaagatatc |
217 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||||||| ||||| | ||||||||||||| || | || ||| ||||||||||||| |
|
|
| T |
22739619 |
catggcatgagggttgctgtttgtggtacggttggatcaggcaagtcgagtttactttcttgtataattggtgaaataccgaagatatc |
22739707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 108 - 221
Target Start/End: Complemental strand, 22750704 - 22750591
Alignment:
| Q |
108 |
aacataaatctcaaagtttctcatggcatgaaggttgctgtttgtggtactgttggatcaggaaagtctactttactttcttgtgtattgggagaagtac |
207 |
Q |
| |
|
||||||||||| ||||||| |||||| ||||| |||||| |||||||||| |||||||| ||||| ||||| |||||||| |||||||| |||||||||| |
|
|
| T |
22750704 |
aacataaatcttaaagtttttcatggaatgaaagttgctatttgtggtacagttggatcgggaaaatctacgttactttcatgtgtattaggagaagtac |
22750605 |
T |
|
| Q |
208 |
cgaagatatcaggg |
221 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
22750604 |
caaagatatcaggg |
22750591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 108 - 252
Target Start/End: Complemental strand, 22727385 - 22727241
Alignment:
| Q |
108 |
aacataaatctcaaagtttctcatggcatgaaggttgctgtttgtggtactgttggatcaggaaagtctactttactttcttgtgtattgggagaagtac |
207 |
Q |
| |
|
||||||||||| | ||||| | ||||||||| |||||||||||||||||| ||||||||||| ||||| | |||| |||||||| || | || ||| ||| |
|
|
| T |
22727385 |
aacataaatctaagagtttttaatggcatgagggttgctgtttgtggtacagttggatcaggcaagtcgagtttaatttcttgtataattggggaaatac |
22727286 |
T |
|
| Q |
208 |
cgaagatatcaggggtccttaaggtttgtggaaaaaaggcctatg |
252 |
Q |
| |
|
|||||||||| ||| | | ||||||||||||| |||||| |||| |
|
|
| T |
22727285 |
cgaagatatctgggaacttgaaggtttgtggaacaaaggcttatg |
22727241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University