View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_low_123 (Length: 260)
Name: NF17277_low_123
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_low_123 |
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Alignment Details
Target: chr5 (Bit Score: 164; Significance: 1e-87; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 20 - 239
Target Start/End: Complemental strand, 11859890 - 11859671
Alignment:
| Q |
20 |
aagtcttcgaaacaagcttgaccaaattgttgttctgggttgacaagaaacccttcagcagtccagagttgaattaatctctctgcatcaatcaaataat |
119 |
Q |
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| T |
11859890 |
aagtctttgaaacaagcttgaccaaattgttgttctggattgataagaaacccttcagccgtccagagttgaatcaatctctctgcatcaatcaaataat |
11859791 |
T |
|
| Q |
120 |
cttctggaaacaatgaacaatatgcaaagcataacttctgataagtgggaaaattgtcgtaatagataaacttaagcatttccattgcttctggaatcca |
219 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||| | ||||| |||||||| |
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| T |
11859790 |
cttctggaaacaatgaacaatatgcgaagcataacttctgataagtgggaaggttgtcgtaatagataaacttaagcgtttctaatgctttcggaatcca |
11859691 |
T |
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| Q |
220 |
gttgtcaccaccaccaccac |
239 |
Q |
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||||||||||| |||||||| |
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| T |
11859690 |
gttgtcaccacgaccaccac |
11859671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 20 - 247
Target Start/End: Complemental strand, 11827755 - 11827528
Alignment:
| Q |
20 |
aagtcttcgaaacaagcttgaccaaattgttgttctgggttgacaagaaacccttcagcagtccagagttgaattaatctctctgcatcaatcaaataat |
119 |
Q |
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||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |
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| T |
11827755 |
aagtcttcgaaacaagcatgaccaaattgttgttctggattgataagaaacccttcaccagtccagagttgaatcaatctctctgcatcaatcaaataat |
11827656 |
T |
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| Q |
120 |
cttctggaaacaatgaacaatatgcaaagcataacttctgataagtgggaaaattgtcgtaatagataaacttaagcatttccattgcttctggaatcca |
219 |
Q |
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| T |
11827655 |
cttctggaaacaatgaacaatatgcaaagcataatttctgataagtgggaagatcgtcgtaatagataagcttcaccttttctagtgcttcccgaatcca |
11827556 |
T |
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| Q |
220 |
gttgtcaccaccaccaccactttgcttc |
247 |
Q |
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| T |
11827555 |
ttcttcaccaccaacaccactatgcttc |
11827528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 65 - 187
Target Start/End: Complemental strand, 12038604 - 12038482
Alignment:
| Q |
65 |
agaaacccttcagcagtccagagttgaattaatctctctgcatcaatcaaataatcttctggaaacaatgaacaatatgcaaagcataacttctgataag |
164 |
Q |
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||||| |||||||| ||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| | |
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| T |
12038604 |
agaaatccttcagccgtccaaagttgaattaatctctcggcatcaattaaataatcttctggaaacaatgaacaatatgcaaagcacaacttctgatacg |
12038505 |
T |
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| Q |
165 |
tgggaaaattgtcgtaatagata |
187 |
Q |
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|||||| || |||||||||||| |
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| T |
12038504 |
tgggaagatcttcgtaatagata |
12038482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 28 - 156
Target Start/End: Original strand, 11902642 - 11902770
Alignment:
| Q |
28 |
gaaacaagcttgaccaaattgttgttctgggttgacaagaaacccttcagcagtccagagttgaattaatctctctgcatcaatcaaataatcttctgga |
127 |
Q |
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|||||||| | ||| ||||||||||| ||| || ||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||| |||| |
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| T |
11902642 |
gaaacaaggtcgacaaaattgttgttgtggaatggtgagaaatccttcagcagtccagagttcaattaatctctcagcatcaatcaaataatctcttgga |
11902741 |
T |
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| Q |
128 |
aacaatgaacaatatgcaaagcataactt |
156 |
Q |
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|||||||||||||||||||| |||||||| |
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| T |
11902742 |
aacaatgaacaatatgcaaaacataactt |
11902770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 71 - 150
Target Start/End: Complemental strand, 11731508 - 11731429
Alignment:
| Q |
71 |
ccttcagcagtccagagttgaattaatctctctgcatcaatcaaataatcttctggaaacaatgaacaatatgcaaagca |
150 |
Q |
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||||||||| ||| ||||||||||||||||| ||||||||||||| || ||||||||||||||||||| |||||||||| |
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| T |
11731508 |
ccttcagcaaaccaaagttgaattaatctctcggcatcaatcaaatgatgttctggaaacaatgaacaaaatgcaaagca |
11731429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 160
Target Start/End: Original strand, 11974974 - 11975068
Alignment:
| Q |
66 |
gaaacccttcagcagtccagagttgaattaatctctctgcatcaatcaaataatcttctggaaacaatgaacaatatgcaaagcataacttctga |
160 |
Q |
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|||| ||||| || ||| |||| |||||||||||||| |||||||||||| ||||| ||||||||||||||| || |||| || ||||||||| |
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| T |
11974974 |
gaaatccttctgctgtcaagagatgaattaatctctcgacatcaatcaaatgatcttgaggaaacaatgaacaaaattcaaaacaaaacttctga |
11975068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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