View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_low_124 (Length: 260)
Name: NF17277_low_124
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_low_124 |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 44684904 - 44685150
Alignment:
| Q |
1 |
atgtgttgaaatattttactcatatcatacaaatattaatttgtgcagttctttagtattgatttatatgatcataagagtataannnnnnnn--ctttc |
98 |
Q |
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| T |
44684904 |
atgtgttgaaatattttactcatatcatacaaatattaatttgtgcagttctttagtattgatttatatgatcataagagtataattttttttttctttc |
44685003 |
T |
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| Q |
99 |
tctgagttaatgat-gacaaatgtaataagaacctataggaatctcactatttttaagctgtaatgctcctgtacaatgcagcactcatctcagagttat |
197 |
Q |
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| T |
44685004 |
tctgagttaatgatagacaaatgtaataagaacctataggaatctcactatttttaagctgtaatgcccctgtacaatgtagcactcatctcagagttat |
44685103 |
T |
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| Q |
198 |
cttctcagggacaaacatattactataagcctagtttggtagcttct |
244 |
Q |
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| T |
44685104 |
cttctcagggacaaacatattactataagcctagtttggtagcttct |
44685150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 13172247 - 13172317
Alignment:
| Q |
1 |
atgtgttgaaatattttactcatatc---atacaaatattaatttgtgcagttctttagtattgatttata |
68 |
Q |
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| T |
13172247 |
atgtgtcgagatattttacttatatcttcatacaagtattaatttgtgcagttatttagtattgatttata |
13172317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 96 - 155
Target Start/End: Original strand, 13172349 - 13172403
Alignment:
| Q |
96 |
ttctctgagttaatgatgacaaatgtaataagaacctataggaatctcactatttttaag |
155 |
Q |
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| T |
13172349 |
ttctttgagttaatgatgacaagtgtaataagaacct-----aatctcactatttttaag |
13172403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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