View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_low_125 (Length: 258)
Name: NF17277_low_125
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_low_125 |
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| [»] scaffold0062 (4 HSPs) |
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Alignment Details
Target: scaffold0062 (Bit Score: 250; Significance: 1e-139; HSPs: 4)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 5398 - 5655
Alignment:
| Q |
1 |
aaggaaaataataaaaatgtgaaggtggtaataagctttggaggttgtgacgaaaaaactccattcaatcctgctgaggataatatatggacggagaaag |
100 |
Q |
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| T |
5398 |
aaggaaaataataaaaatgtgaaggtggtaataagctttggaggttgtgacgaaaaaactccattcaatcctgctgaggataatatatggacggagaaag |
5497 |
T |
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| Q |
101 |
ctgtggcttcactcaaaacgatcatcctaagattcaaggatcaaagtggcagaagtataattgatggtattgacatcaattatgagcacatcctcacaag |
200 |
Q |
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| T |
5498 |
ctgtggcttcactcaaagtgatcatcctaagattcaaggatcaaagtggcagaagtataattgatggtattgacatcaattatgagcacatcctcacaag |
5597 |
T |
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| Q |
201 |
tgttgataaagatcgatgtcgtttcgcggagtgcttagggcaagttataacagatctc |
258 |
Q |
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| T |
5598 |
tgttgataaagatcgatgtcgtttcgcggagtgcttagggcaagttataacagatctc |
5655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 15726 - 15873
Alignment:
| Q |
1 |
aaggaaaataataaaaatgtgaaggtggtaataagctttggaggttgtga---cgaaaaaactccattcaatcctgctgaggataatatatggacggaga |
97 |
Q |
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| T |
15726 |
aagggaaataatccaaatgtgaaggtggtaataagcattggaggtaatgacaccgttaaaactccattcaatcctgttgaggaaactatctggattacgc |
15825 |
T |
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| Q |
98 |
aagctgtggcttcactcaaaacgatcatcctaagattcaaggatcaaa |
145 |
Q |
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| T |
15826 |
gggctgtgtcttcactcaaagtgatcatccaaaaatacaaggatcaaa |
15873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 25894 - 26041
Alignment:
| Q |
1 |
aaggaaaataataaaaatgtgaaggtggtaataagctttggaggttgtga---cgaaaaaactccattcaatcctgctgaggataatatatggacggaga |
97 |
Q |
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| T |
25894 |
aagggaaataatccaaatgtgaaggtggtaataagcattggaggtaatgacaccgttaaaactccattcaatcctgttgaggaaactatctggattacgc |
25993 |
T |
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| Q |
98 |
aagctgtggcttcactcaaaacgatcatcctaagattcaaggatcaaa |
145 |
Q |
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| T |
25994 |
gggctgtgtcttcactcaaagtgatcatccaaaaatacaaggatcaaa |
26041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 36060 - 36207
Alignment:
| Q |
1 |
aaggaaaataataaaaatgtgaaggtggtaataagctttggaggttgtga---cgaaaaaactccattcaatcctgctgaggataatatatggacggaga |
97 |
Q |
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| T |
36060 |
aagggaaataatccaaatgtgaaggtggtaataagcattggaggtaatgacaccgttaaaactccattcaatcctgttgaggaaactatctggattacgc |
36159 |
T |
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| Q |
98 |
aagctgtggcttcactcaaaacgatcatcctaagattcaaggatcaaa |
145 |
Q |
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| T |
36160 |
gggctgtgtcttcactcaaagtgatcatccaaaaatacaaggatcaaa |
36207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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