View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_low_126 (Length: 254)
Name: NF17277_low_126
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_low_126 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 42667100 - 42666850
Alignment:
| Q |
1 |
caaaggtaactaaatatgaaccaaaatgagtacatgttcttgtccactaggaaaactagtgttcttttagggtcagcttcctctatatggataaaaactt |
100 |
Q |
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| T |
42667100 |
caaagataactaaatatgaaccaaaatgagtacatgttcttgtccactaggaaaactagtgttcttttagggtc---ttcctctatatggataaaaactt |
42667004 |
T |
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| Q |
101 |
gaatatcaaccacataaaaacaataatgtagtatgaatcttaacttagttaaaaacataaaactatatcaccatcatatgcatgaataatgatcgataaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42667003 |
gaatatcaaccacataaaaacaataatgtagtatgaatcttaacttagttaaaaacataaaactatatcaccatcatatgcatgaataatgatcgataaa |
42666904 |
T |
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| Q |
201 |
accgtactccgacatatgacctgctaaaacgcagttaaattgtcttttatattt |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42666903 |
accgtactccgacatatgacctgctaaaacgcagttaaattgtcttttatattt |
42666850 |
T |
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