View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_low_13 (Length: 601)
Name: NF17277_low_13
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 9 - 320
Target Start/End: Original strand, 29100314 - 29100623
Alignment:
| Q |
9 |
aattattctaataaagttttttcttaca-agggcctacgaagcaactttcaactcgcacggaactctttagatttctaaaatttctccaatccacaacaa |
107 |
Q |
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| T |
29100314 |
aattatcctaataaagttttttcttatagagggcctacgaaacaactttcaactctcacgtaactctttatacttctaaaatttctccgatccacaacaa |
29100413 |
T |
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| Q |
108 |
aattatccatttatttacaatggcggttaattttcattcgtaatactattttaattagttaaactaatttaaaaggtgattcatccgatctaaaaaaggg |
207 |
Q |
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| T |
29100414 |
aattatccatttattcacaatggcggttaacttccgttcataatactttttaaattagttaaactaatttaaaaagtaattcatccgatttaaaaagtga |
29100513 |
T |
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| Q |
208 |
cgaatgacaattaactactattagaagagaggcgaataacaacggttaaatgctgctcggttaaccatagttacgaaaatgagaaattttgaaagtgaaa |
307 |
Q |
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| T |
29100514 |
caaatgacaattaactactattagaagagaggcg---aacaacggttaaatgctgctcggttaataatagttacaaaaatgagaaattttgaaagtgtaa |
29100610 |
T |
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| Q |
308 |
acagtaatttttc |
320 |
Q |
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| T |
29100611 |
acagtaatttttc |
29100623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 423 - 582
Target Start/End: Original strand, 29101465 - 29101624
Alignment:
| Q |
423 |
cgccgaaaccctaaccagagaaccagaaaa-aatgacaaccagcctcaagaaaaaccggaagaagcgcggccacgtaagcgccggccacggccgaatcgg |
521 |
Q |
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| T |
29101465 |
cgccgaaacc-taaccagagaaccagaaaaaaatgacaaccagcctcaagaaaaaccggaagaagcgcggccacgtaagcgccggccacggccgtatcgg |
29101563 |
T |
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| Q |
522 |
caaacaccgaaagcaccctggaggccgaggaaacgccggaggaatgcaccaccaccgcatc |
582 |
Q |
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| T |
29101564 |
aaaacaccgcaaacaccctggaggccgaggaaacgccggaggtatgcaccatcaccgcatc |
29101624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 453 - 582
Target Start/End: Original strand, 14260934 - 14261063
Alignment:
| Q |
453 |
aatgacaaccagcctcaagaaaaaccggaagaagcgcggccacgtaagcgccggccacggccgaatcggcaaacaccgaaagcaccctggaggccgagga |
552 |
Q |
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| T |
14260934 |
aatgacaacccgattcaagaagaacaggaagaagcgcggccacgtcagtgccggtcacggtcgtatcggaaaacaccgcaagcatcccggaggtcgtggt |
14261033 |
T |
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| Q |
553 |
aacgccggaggaatgcaccaccaccgcatc |
582 |
Q |
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| T |
14261034 |
aacgccggaggtatgcatcaccatcgcatc |
14261063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 314
Target Start/End: Complemental strand, 52811 - 52771
Alignment:
| Q |
274 |
atagttacgaaaatgagaaattttgaaagtgaaaacagtaa |
314 |
Q |
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| T |
52811 |
atagctacgaaaatgagaaattttgaaagtgagaagagtaa |
52771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 314
Target Start/End: Original strand, 40665027 - 40665067
Alignment:
| Q |
274 |
atagttacgaaaatgagaaattttgaaagtgaaaacagtaa |
314 |
Q |
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| T |
40665027 |
atagttgcgaaaatgagaaattttgaaagtgacaagagtaa |
40665067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 454 - 575
Target Start/End: Original strand, 34601565 - 34601686
Alignment:
| Q |
454 |
atgacaaccagcctcaagaaaaaccggaagaagcgcggccacgtaagcgccggccacggccgaatcggcaaacaccgaaagcaccctggaggccgaggaa |
553 |
Q |
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| T |
34601565 |
atgacgacccgcttcaagaagaacaggaagaagagaggtcacgtgagcgccggtcacggtcgtatcggaaagcatcgcaagcatcccggaggtcgtggta |
34601664 |
T |
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| Q |
554 |
acgccggaggaatgcaccacca |
575 |
Q |
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| T |
34601665 |
acgccggaggaatgcaccacca |
34601686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 314
Target Start/End: Original strand, 2166368 - 2166408
Alignment:
| Q |
274 |
atagttacgaaaatgagaaattttgaaagtgaaaacagtaa |
314 |
Q |
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| T |
2166368 |
atagttgcgaaaatgagaaattttgaaagtgacaagagtaa |
2166408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 274 - 314
Target Start/End: Original strand, 2178001 - 2178041
Alignment:
| Q |
274 |
atagttacgaaaatgagaaattttgaaagtgaaaacagtaa |
314 |
Q |
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| T |
2178001 |
atagttgcgaaaatgagaaattttgaaagtgacaagagtaa |
2178041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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