View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17277_low_130 (Length: 250)

Name: NF17277_low_130
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17277_low_130
NF17277_low_130
[»] chr1 (30 HSPs)
chr1 (12-242)||(42180004-42180234)
chr1 (53-240)||(18304752-18304939)
chr1 (53-241)||(9954975-9955163)
chr1 (53-240)||(9352004-9352191)
chr1 (56-239)||(13100195-13100378)
chr1 (53-241)||(13276206-13276394)
chr1 (53-238)||(25146712-25146896)
chr1 (53-241)||(23528657-23528845)
chr1 (53-241)||(9327153-9327343)
chr1 (54-229)||(12513283-12513458)
chr1 (53-241)||(9128780-9128968)
chr1 (54-229)||(19009898-19010073)
chr1 (70-241)||(16125395-16125569)
chr1 (53-240)||(21846215-21846396)
chr1 (162-241)||(47785969-47786048)
chr1 (141-239)||(32881416-32881514)
chr1 (129-232)||(18228278-18228380)
chr1 (88-241)||(17869690-17869843)
chr1 (53-190)||(41032661-41032798)
chr1 (53-147)||(14074404-14074498)
chr1 (53-127)||(30619076-30619150)
chr1 (72-185)||(17055995-17056108)
chr1 (53-133)||(12800629-12800709)
chr1 (194-241)||(12002812-12002859)
chr1 (190-242)||(16446698-16446750)
chr1 (55-115)||(27917518-27917578)
chr1 (53-136)||(18337567-18337649)
chr1 (53-115)||(34478836-34478898)
chr1 (53-125)||(24117008-24117080)
chr1 (189-233)||(27917319-27917363)
[»] chr4 (29 HSPs)
chr4 (53-240)||(9770113-9770300)
chr4 (53-240)||(13023568-13023758)
chr4 (53-239)||(5361905-5362091)
chr4 (54-240)||(5375666-5375852)
chr4 (53-241)||(10142900-10143088)
chr4 (57-239)||(8889233-8889415)
chr4 (53-241)||(36120825-36121013)
chr4 (51-241)||(17466078-17466268)
chr4 (53-205)||(13551598-13551750)
chr4 (90-241)||(9911351-9911502)
chr4 (98-241)||(37240304-37240446)
chr4 (53-241)||(23064901-23065091)
chr4 (53-185)||(8011212-8011344)
chr4 (53-137)||(24719518-24719602)
chr4 (53-146)||(7044728-7044821)
chr4 (56-131)||(6347114-6347189)
chr4 (196-241)||(5846059-5846104)
chr4 (196-241)||(9149664-9149709)
chr4 (53-137)||(4156764-4156848)
chr4 (189-241)||(7825186-7825238)
chr4 (189-241)||(8011077-8011129)
chr4 (53-132)||(7452421-7452499)
chr4 (196-234)||(18403672-18403710)
chr4 (200-234)||(24719722-24719756)
chr4 (189-234)||(7045078-7045123)
chr4 (196-241)||(8409725-8409770)
chr4 (196-233)||(55476119-55476156)
chr4 (189-225)||(7815783-7815819)
chr4 (53-137)||(18459752-18459836)
[»] chr6 (29 HSPs)
chr6 (53-241)||(26053236-26053424)
chr6 (53-241)||(26073289-26073477)
chr6 (53-241)||(30912352-30912540)
chr6 (53-240)||(15528051-15528238)
chr6 (53-241)||(19748334-19748522)
chr6 (70-239)||(23897829-23897998)
chr6 (53-241)||(17543680-17543868)
chr6 (53-232)||(7223520-7223692)
chr6 (53-234)||(17250058-17250238)
chr6 (98-240)||(21354786-21354928)
chr6 (60-223)||(22498843-22499006)
chr6 (53-224)||(7918338-7918509)
chr6 (53-175)||(6943466-6943588)
chr6 (53-234)||(11327518-11327699)
chr6 (111-240)||(17103254-17103383)
chr6 (53-190)||(27233268-27233405)
chr6 (56-241)||(10508958-10509148)
chr6 (55-211)||(2912218-2912373)
chr6 (186-241)||(7918288-7918343)
chr6 (177-229)||(27614594-27614648)
chr6 (70-129)||(3573984-3574043)
chr6 (196-241)||(645417-645462)
chr6 (197-241)||(5422600-5422644)
chr6 (57-137)||(18491081-18491161)
chr6 (209-241)||(27233239-27233271)
chr6 (52-147)||(4597185-4597279)
chr6 (78-137)||(18491005-18491064)
chr6 (198-241)||(27890519-27890562)
chr6 (53-131)||(5422798-5422876)
[»] chr3 (33 HSPs)
chr3 (53-218)||(29067285-29067450)
chr3 (53-241)||(8156070-8156259)
chr3 (53-240)||(28745771-28745964)
chr3 (55-240)||(39427905-39428090)
chr3 (53-239)||(24620142-24620331)
chr3 (125-239)||(42696920-42697034)
chr3 (53-205)||(20756040-20756192)
chr3 (57-214)||(17064326-17064483)
chr3 (68-238)||(22494731-22494894)
chr3 (53-185)||(24649684-24649817)
chr3 (178-241)||(15515196-15515259)
chr3 (98-241)||(22137324-22137465)
chr3 (52-208)||(3449265-3449420)
chr3 (61-241)||(21963438-21963618)
chr3 (61-241)||(21985874-21986054)
chr3 (53-175)||(30727697-30727819)
chr3 (53-198)||(25870350-25870504)
chr3 (53-137)||(15806550-15806633)
chr3 (53-147)||(27676357-27676451)
chr3 (127-204)||(22356029-22356106)
chr3 (56-151)||(17796272-17796367)
chr3 (56-151)||(19104712-19104807)
chr3 (180-229)||(9152935-9152984)
chr3 (74-147)||(10872980-10873053)
chr3 (194-234)||(8592359-8592399)
chr3 (209-241)||(25870262-25870294)
chr3 (53-151)||(17796378-17796476)
chr3 (53-151)||(17796487-17796585)
chr3 (53-151)||(19104818-19104916)
chr3 (53-151)||(19104927-19105025)
chr3 (196-234)||(19348684-19348722)
chr3 (196-234)||(27676579-27676617)
chr3 (198-234)||(9169806-9169842)
[»] chr2 (26 HSPs)
chr2 (53-239)||(36429849-36430035)
chr2 (53-232)||(31237926-31238105)
chr2 (53-226)||(30432420-30432593)
chr2 (53-235)||(1404784-1404966)
chr2 (52-239)||(35565896-35566083)
chr2 (54-241)||(31578007-31578193)
chr2 (88-241)||(15588792-15588943)
chr2 (53-234)||(20063715-20063896)
chr2 (161-241)||(1690668-1690748)
chr2 (53-181)||(23863321-23863449)
chr2 (53-175)||(19491856-19491979)
chr2 (53-147)||(5395682-5395776)
chr2 (189-241)||(25539086-25539138)
chr2 (189-241)||(34841717-34841769)
chr2 (53-147)||(1690796-1690890)
chr2 (200-241)||(19492079-19492120)
chr2 (196-241)||(41002156-41002201)
chr2 (194-234)||(974467-974507)
chr2 (53-137)||(16766711-16766795)
chr2 (189-241)||(16766922-16766974)
chr2 (53-147)||(15266083-15266177)
chr2 (196-234)||(26251658-26251696)
chr2 (194-235)||(21869280-21869321)
chr2 (84-137)||(31023255-31023308)
chr2 (80-137)||(34841584-34841641)
chr2 (197-229)||(5395475-5395507)
[»] chr7 (37 HSPs)
chr7 (53-241)||(24725417-24725605)
chr7 (53-236)||(27221419-27221602)
chr7 (53-241)||(44944785-44944977)
chr7 (52-241)||(5058529-5058718)
chr7 (53-241)||(14055252-14055440)
chr7 (53-241)||(14365280-14365468)
chr7 (53-241)||(4247357-4247545)
chr7 (53-240)||(24990012-24990199)
chr7 (53-232)||(5715291-5715469)
chr7 (90-240)||(17811385-17811535)
chr7 (53-235)||(26281256-26281437)
chr7 (54-241)||(8346472-8346660)
chr7 (53-205)||(9685220-9685372)
chr7 (53-241)||(8343739-8343928)
chr7 (53-239)||(8329986-8330173)
chr7 (122-241)||(20570825-20570944)
chr7 (72-210)||(27509914-27510052)
chr7 (61-222)||(11324988-11325148)
chr7 (53-205)||(7730319-7730470)
chr7 (53-190)||(11326387-11326524)
chr7 (53-214)||(22687631-22687792)
chr7 (53-190)||(39182261-39182397)
chr7 (162-234)||(6916890-6916961)
chr7 (59-175)||(8571250-8571366)
chr7 (53-138)||(21846469-21846553)
chr7 (70-241)||(26617416-26617587)
chr7 (53-147)||(30294176-30294267)
chr7 (194-241)||(21846386-21846433)
chr7 (196-241)||(1981276-1981321)
chr7 (53-137)||(8630002-8630086)
chr7 (196-240)||(21157625-21157669)
chr7 (190-241)||(17809068-17809119)
chr7 (189-232)||(26565497-26565540)
chr7 (156-190)||(21846335-21846369)
chr7 (196-234)||(25842691-25842729)
chr7 (70-143)||(4574489-4574562)
chr7 (213-241)||(27509351-27509379)
[»] chr8 (26 HSPs)
chr8 (53-240)||(5922050-5922237)
chr8 (54-241)||(15294672-15294859)
chr8 (54-241)||(15475041-15475228)
chr8 (54-236)||(19704400-19704583)
chr8 (53-241)||(11879601-11879789)
chr8 (53-241)||(11897017-11897205)
chr8 (53-241)||(45403030-45403218)
chr8 (56-239)||(31424167-31424350)
chr8 (91-241)||(6810861-6811010)
chr8 (101-241)||(23142224-23142364)
chr8 (72-240)||(29384258-29384425)
chr8 (70-237)||(22910146-22910313)
chr8 (56-239)||(3094185-3094378)
chr8 (53-239)||(27836406-27836592)
chr8 (71-231)||(32424354-32424511)
chr8 (100-240)||(7489224-7489368)
chr8 (53-234)||(17646994-17647177)
chr8 (156-234)||(9212202-9212280)
chr8 (70-242)||(6292281-6292453)
chr8 (53-115)||(17788372-17788434)
chr8 (53-127)||(477101-477175)
chr8 (53-131)||(15761489-15761567)
chr8 (53-131)||(24056618-24056696)
chr8 (196-234)||(40541781-40541819)
chr8 (198-234)||(16752156-16752192)
chr8 (53-113)||(30240697-30240757)
[»] chr5 (20 HSPs)
chr5 (53-240)||(18843716-18843903)
chr5 (53-239)||(21059098-21059283)
chr5 (53-241)||(18051473-18051658)
chr5 (53-241)||(43234869-43235057)
chr5 (53-241)||(19578943-19579131)
chr5 (52-240)||(23172369-23172561)
chr5 (101-240)||(20320992-20321130)
chr5 (53-214)||(38158221-38158382)
chr5 (60-241)||(27340130-27340307)
chr5 (63-241)||(41688605-41688782)
chr5 (101-241)||(19979648-19979788)
chr5 (53-218)||(22645681-22645847)
chr5 (54-126)||(19042444-19042516)
chr5 (53-175)||(20923719-20923841)
chr5 (196-241)||(26021464-26021509)
chr5 (196-241)||(24648160-24648205)
chr5 (194-234)||(19377742-19377782)
chr5 (196-241)||(22984754-22984799)
chr5 (204-240)||(19042368-19042404)
chr5 (194-234)||(41427548-41427588)
[»] scaffold0186 (1 HSPs)
scaffold0186 (53-241)||(8444-8632)
[»] scaffold0417 (1 HSPs)
scaffold0417 (53-241)||(7395-7583)
[»] scaffold0042 (1 HSPs)
scaffold0042 (53-237)||(93649-93832)
[»] scaffold0510 (1 HSPs)
scaffold0510 (70-190)||(91-212)
[»] scaffold0016 (1 HSPs)
scaffold0016 (177-227)||(58736-58786)
[»] scaffold0603 (2 HSPs)
scaffold0603 (189-241)||(8900-8952)
scaffold0603 (53-131)||(9070-9148)
[»] scaffold0048 (1 HSPs)
scaffold0048 (53-130)||(48839-48916)
[»] scaffold0115 (1 HSPs)
scaffold0115 (53-137)||(35103-35187)
[»] scaffold0017 (1 HSPs)
scaffold0017 (194-234)||(38491-38531)
[»] scaffold0061 (1 HSPs)
scaffold0061 (199-234)||(76273-76308)
[»] scaffold0526 (1 HSPs)
scaffold0526 (196-242)||(8288-8333)
[»] scaffold1178 (1 HSPs)
scaffold1178 (196-241)||(466-511)
[»] scaffold0027 (1 HSPs)
scaffold0027 (197-234)||(133075-133112)


Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 12 - 242
Target Start/End: Complemental strand, 42180234 - 42180004
Alignment:
Q  12 aagaatggataccattgtaccaaaaacaaagaatggatagtttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcacct 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||| |||||||||| |||    
T  42180234 aagaatggataccattgtaccaaaaacaaagaatggatagtttgttgtcaaaatcccaacttaaattctaaaattcaggattttgcgactttcttcccct 42180135  T
Q  112 tcaatgagtcaaatccatagtagaatttcaaaatagacaatatacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactat 211  Q
    |||| ||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42180134 tcaacgagtcaaatccatagtagaatttcaaaataggcaaaatacatcgattttgattgtgattctacgatttcttataaactaagtcatttatgactat 42180035  T
Q  212 ataccatttataacatatatttagtattata 242  Q
    |||||||||||||||||||| ||||||||||    
T  42180034 ataccatttataacatatatatagtattata 42180004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 53 - 240
Target Start/End: Complemental strand, 18304939 - 18304752
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaat-gagtcaaatccatagtagaatttcaaaatagacaa 151  Q
    |||||||||||||| |||||||||| |||||||| || |||||| ||||||||||||||||||  || |||||| ||||||||||| |||||||||||||    
T  18304939 ttgttgtcaaaatcccaacttaaatcctaaaatccagtattttgcgactttcttcaccttcaaacgactcaaattcatagtagaatctcaaaatagacaa 18304840  T
Q  152 tatacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtatta 240  Q
     || ||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  18304839 aatccatcaattttgattgcgatt-tacgatttcttataagctaagtcatttatgactatataccattcataacgtatatttagtatta 18304752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 53 - 241
Target Start/End: Complemental strand, 9955163 - 9954975
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    |||||||||||||| |||||||||| ||||||| |||||||||| |||||||||||||||||| || | |||||||  |||||||  |||||||  |||     
T  9955163 ttgttgtcaaaatcccaacttaaatcctaaaatttaggattttgcgactttcttcaccttcaacgacttaaatccaatgtagaatcccaaaataagcaaa 9955064  T
Q  153 atacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtattat 241  Q
    || |||| |||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  9955063 atccatcgattttgattgcgattttacgatttcttataaactaggtcatttatgactatataccatttataacatatattcagtattat 9954975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 53 - 240
Target Start/End: Complemental strand, 9352191 - 9352004
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    |||||||||||||| | |||||||| |||||||| ||| ||||| |||||||||||||||||| || ||||||| |||| ||| |  ||||||||||||     
T  9352191 ttgttgtcaaaatcccgacttaaatcctaaaatccagggttttgcgactttcttcaccttcaaagactcaaatctatagcagagtcccaaaatagacaaa 9352092  T
Q  153 atacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtatta 240  Q
    || | || |||||||||| |||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9352091 atccgtcgattttgattgcgattttatgatttcttataaactaagtcatttttgactatataccatttataacatatatttagtatta 9352004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 56 - 239
Target Start/End: Original strand, 13100195 - 13100378
Alignment:
Q  56 ttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaatata 155  Q
    ||||||||||| ||||||||||||||||||| ||||||||  |||||||||||| ||||| || ||||||||||||||||||   ||||||| ||| |      
T  13100195 ttgtcaaaatcccaacttaaattctaaaatcgaggattttacgactttcttcacgttcaacgactcaaatccatagtagaatcctaaaataggcaaaaac 13100294  T
Q  156 catcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtatt 239  Q
    |||| |||||||||| |||| ||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  13100295 catcgattttgattgcgattttacaatttcttataaaccaagtcatttatgactatataccatttgtaacatatatttagtatt 13100378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 53 - 241
Target Start/End: Complemental strand, 13276394 - 13276206
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    |||||||||||||| | | |||||| |||||||||||||||||| ||||||||||| |||||| ||   ||||||||||||||||   ||||||| |||     
T  13276394 ttgttgtcaaaatcccgatttaaatcctaaaatctaggattttgcgactttcttcatcttcaacgacctaaatccatagtagaatcctaaaataggcaaa 13276295  T
Q  153 atacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtattat 241  Q
    ||  ||| |||||||||| |||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  13276294 atcaatcgattttgattgcgattttacgatttcttataaattaagtcatttatgactatatatcatttataacatatatttagtattat 13276206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 53 - 238
Target Start/End: Complemental strand, 25146896 - 25146712
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    ||||||||||||||   |||||||| |||||||  || |||||| |||||||||||||||||| || |||||| |||||||||||  ||||||||||||     
T  25146896 ttgttgtcaaaatcctgacttaaatcctaaaattcagaattttgcgactttcttcaccttcaacgactcaaattcatagtagaatcccaaaatagacaaa 25146797  T
Q  153 atacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtat 238  Q
     |||||||||||| |||| |||| |||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||    
T  25146796 gtacatcaattttaattgcgatt-tacgatttcttataaactaagttatttatgactatatacaatttataacgtatatttagtat 25146712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 53 - 241
Target Start/End: Original strand, 23528657 - 23528845
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    |||||||||||||| ||||||||||  ||||||  ||||||||| ||||||||||| |||||| || ||||||||||||||||||   ||||||| |||     
T  23528657 ttgttgtcaaaatcccaacttaaatcttaaaattcaggattttgcgactttcttcatcttcaacgactcaaatccatagtagaatcctaaaataggcaaa 23528756  T
Q  153 atacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtattat 241  Q
    ||  ||| ||||||| || |||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||    
T  23528757 atctatcgattttgaatgcgattttacgatttcttataaacgaagtcatttatgactatataccatttataacgtatatttattattat 23528845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 53 - 241
Target Start/End: Complemental strand, 9327343 - 9327153
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    ||||||| ||||||   |||||||| ||||||| |||| ||||| |||||||| ||||||||| || ||||||| |||||| |||  ||||||||||||     
T  9327343 ttgttgttaaaatcctgacttaaatcctaaaatttagggttttgcgactttctacaccttcaacgactcaaatctatagtaaaatcccaaaatagacaaa 9327244  T
Q  153 atacatcaattttgattgtgattctacgatttcttataaactaagtca--tttatgactatataccatttataacatatatttagtattat 241  Q
    || |||| |||||||||| |||| ||||||||||||||||||||||||  ||| |||||||||||||||||||| ||||||||||||||||    
T  9327243 atccatcgattttgattgcgattttacgatttcttataaactaagtcatttttttgactatataccatttataatatatatttagtattat 9327153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 54 - 229
Target Start/End: Original strand, 12513283 - 12513458
Alignment:
Q  54 tgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaata 153  Q
    ||||||||||||| | |||||||| ||| |||||||||||||| ||||||||||| |||||| || |||||||||||||| |||   ||||||  ||| |    
T  12513283 tgttgtcaaaatcccgacttaaatcctacaatctaggattttgcgactttcttcagcttcaacgactcaaatccatagtaaaatcataaaataatcaaaa 12513382  T
Q  154 tacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatat 229  Q
    | |||| |||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  12513383 tccatcgattttgattgcgattttacgatttcttataaactaagtcatttacgactatataccatatataacatat 12513458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 53 - 241
Target Start/End: Complemental strand, 9128968 - 9128780
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    ||||||| |||||| | |||||||| ||||||  |||||| ||| |||||||||||| || || || ||||||  |||||||||| | |||||||||||     
T  9128968 ttgttgttaaaatcacgacttaaatcctaaaaattaggatcttgcgactttcttcacatttaacgactcaaatttatagtagaatcttaaaatagacaaa 9128869  T
Q  153 atacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtattat 241  Q
    || |||| |||||||||| ||||  ||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||    
T  9128868 attcatcgattttgattgcgatttgacgatttcttataaactaagttatttttgactatataccatttataacatatctttagtattat 9128780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 54 - 229
Target Start/End: Complemental strand, 19010073 - 19009898
Alignment:
Q  54 tgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaata 153  Q
    |||||||||||||   |||||||| |||||||  ||||||||| |||||| |||||||||||||| | |||||||||||| ||||  ||||||  ||| |    
T  19010073 tgttgtcaaaatccggacttaaatcctaaaattcaggattttgcgacttttttcaccttcaatgacttaaatccatagtaaaattctaaaataagcaaaa 19009974  T
Q  154 tacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatat 229  Q
    | |||| |||||||||| |||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  19009973 tccatcgattttgattgcgattttacgatttcttataaattaagtcatttataactatataccatttataacatat 19009898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 70 - 241
Target Start/End: Complemental strand, 16125569 - 16125395
Alignment:
Q  70 acttaaattctaaaatctaggattttgagactttctt---caccttcaatgagtcaaatccatagtagaatttcaaaatagacaatatacatcaattttg 166  Q
    |||||||| |||||||  ||||||||| |||||||||   ||||||||| ||   |||||||||||| ||| | ||||||| ||| || |||  ||||||    
T  16125569 acttaaatcctaaaattcaggattttgcgactttctttttcaccttcaacgacctaaatccatagtaaaatcttaaaataggcaaaatccattgattttg 16125470  T
Q  167 attgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtattat 241  Q
    |||| |||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  16125469 attgcgattttacgattttttataaactaagtcatttatgaatatataccatttataacatatatttagtattat 16125395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 53 - 240
Target Start/End: Complemental strand, 21846396 - 21846215
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    |||||||||||||| | | |||||| |||||||| ||||||||| |||||| ||||||||||| || |||||||||||||||||| |||||||||| ||     
T  21846396 ttgttgtcaaaatcccgagttaaatcctaaaatccaggattttgcgacttttttcaccttcaacgactcaaatccatagtagaatctcaaaatagaaaaa 21846297  T
Q  153 atacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtatta 240  Q
    || |||| |||||||||| |||| |   |||| | ||||||   ||||||||| ||||||||  ||||||||||||||||||||||||    
T  21846296 atccatcgattttgattgcgatttt---atttttcataaac---gtcatttataactatatataatttataacatatatttagtatta 21846215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 162 - 241
Target Start/End: Original strand, 47785969 - 47786048
Alignment:
Q  162 ttttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtattat 241  Q
    |||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47785969 ttttgattgcaattttacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtattat 47786048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 141 - 239
Target Start/End: Original strand, 32881416 - 32881514
Alignment:
Q  141 aaaatagacaatatacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtatt 239  Q
    ||||||| ||| || |||| |||||||||| |||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  32881416 aaaataggcaaaattcatcgattttgattgcgattttacgatttcttataaattaagtcattcatgactatataccatttataacatatatttagtatt 32881514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 129 - 232
Target Start/End: Original strand, 18228278 - 18228380
Alignment:
Q  129 tagtagaatttcaaaatagacaatatacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacata 228  Q
    |||||||||  |||||||| ||| || ||||||||||||||| |||| || ||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  18228278 tagtagaatcccaaaataggcaaaatccatcaattttgattg-gattttatgatttcttataaattaagttatttatgactatataccatttataacata 18228376  T
Q  229 tatt 232  Q
    ||||    
T  18228377 tatt 18228380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 88 - 241
Target Start/End: Complemental strand, 17869843 - 17869690
Alignment:
Q  88 aggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaatatacatcaattttgattgtgattctacgatttctt 187  Q
    ||||||||| |||||||||||||||| | ||   ||||||| ||||||||   ||||||| ||| || | || ||||||||||  ||| |||||||||||    
T  17869843 aggattttgcgactttcttcaccttcgacgacctaaatccacagtagaatcctaaaataggcaaaattcttcgattttgattgcaattttacgatttctt 17869744  T
Q  188 ataaactaagtcatttatgactatataccatttataacatatatttagtattat 241  Q
     ||||||||||| ||||| || |||||| ||||| |||||||||||||||||||    
T  17869743 ttaaactaagtcttttataaccatatactatttacaacatatatttagtattat 17869690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 53 - 190
Target Start/End: Complemental strand, 41032798 - 41032661
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    |||||||||||||||| ||||||||  || |||  ||||||||| || ||||||||||||||| || |||||||||||||||||||  ||||||| |||     
T  41032798 ttgttgtcaaaatctcgacttaaatcgtagaattcaggattttgcgattttcttcaccttcaacgactcaaatccatagtagaattctaaaataggcaaa 41032699  T
Q  153 atacatcaattttgattgtgattctacgatttcttata 190  Q
    || |||| ||||| |||| |||| ||| ||||||||||    
T  41032698 atccatcgattttaattgcgattttacaatttcttata 41032661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 147
Target Start/End: Complemental strand, 14074498 - 14074404
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatag 147  Q
    |||||||||||||| |  ||||||| ||||||| |||||||||| |||||||||||  ||||| || ||||||||| |||||||| | |||||||    
T  14074498 ttgttgtcaaaatcccgtcttaaatcctaaaatgtaggattttgcgactttcttcatgttcaacgactcaaatccagagtagaatcttaaaatag 14074404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 127
Target Start/End: Original strand, 30619076 - 30619150
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatcc 127  Q
    |||||||||||||| | |||||||| |||||||| ||||||||| || ||||||||||||||| || ||||||||    
T  30619076 ttgttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgattttcttcaccttcaacgactcaaatcc 30619150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 72 - 185
Target Start/End: Complemental strand, 17056108 - 17055995
Alignment:
Q  72 ttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaatatacatcaattttgattgt 171  Q
    |||||| |||||||| |||||||||  | ||||| ||||||||| || ||| |||||||||||||||| ||||||   || || |||| ||||||||||     
T  17056108 ttaaatcctaaaatccaggattttgcaattttctccaccttcaacgactcagatccatagtagaattttaaaataagtaaaatccatcgattttgattgc 17056009  T
Q  172 gattctacgatttc 185  Q
    |||| |||||||||    
T  17056008 gattttacgatttc 17055995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 53 - 133
Target Start/End: Complemental strand, 12800709 - 12800629
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagta 133  Q
    ||||||| |||||| |||||||||| ||||||| |||||||||  |||||||||||| ||||| || ||||||| ||||||    
T  12800709 ttgttgtgaaaatcccaacttaaatcctaaaatttaggattttacgactttcttcacattcaacgactcaaatctatagta 12800629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 194 - 241
Target Start/End: Complemental strand, 12002859 - 12002812
Alignment:
Q  194 taagtcatttatgactatataccatttataacatatatttagtattat 241  Q
    |||||||||||||||||||| | ||||||||||||||||||| |||||    
T  12002859 taagtcatttatgactatatgcaatttataacatatatttagcattat 12002812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 16446750 - 16446698
Alignment:
Q  190 aaactaagtcatttatgactatataccatttataacatatatttagtattata 242  Q
    ||||| |||||| ||||| ||||| | ||||||||||||||||||||||||||    
T  16446750 aaactgagtcatatatgattatatgcaatttataacatatatttagtattata 16446698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 115
Target Start/End: Complemental strand, 27917578 - 27917518
Alignment:
Q  55 gttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaa 115  Q
    |||||||||||| | ||||||||||| ||||||||||||||| || ||| || ||||||||    
T  27917578 gttgtcaaaatcccgacttaaattctgaaatctaggattttgcgattttatttaccttcaa 27917518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 136
Target Start/End: Complemental strand, 18337649 - 18337567
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaa 136  Q
    |||||||||||||| | ||||| |  |||||||| |||||||||  ||||| ||||||||||| || |||||||||||| ||||    
T  18337649 ttgttgtcaaaatcccgacttatac-ctaaaatccaggattttgcaactttattcaccttcaacgactcaaatccatagcagaa 18337567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 115
Target Start/End: Complemental strand, 34478898 - 34478836
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaa 115  Q
    ||||||| |||||| | ||||||||  |||||| | |||||||| ||||||||||||||||||    
T  34478898 ttgttgttaaaatcccgacttaaatcttaaaatttgggattttgtgactttcttcaccttcaa 34478836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 125
Target Start/End: Original strand, 24117008 - 24117080
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaat 125  Q
    |||||||||||||  ||| |||||||||||||| || ||||||   ||||| ||||||||||| || ||||||    
T  24117008 ttgttgtcaaaattccaatttaaattctaaaatttaagattttacaactttattcaccttcaacgattcaaat 24117080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 27917363 - 27917319
Alignment:
Q  189 taaactaagtcatttatgactatataccatttataacatatattt 233  Q
    |||||| ||| |||||||||||||||| |||||||| ||||||||    
T  27917363 taaactgagttatttatgactatatacgatttataatatatattt 27917319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 53 - 240
Target Start/End: Original strand, 9770113 - 9770300
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    ||||||| |||||||| ||||||||||||||||||||||||||| |||||| ||||||||||| || ||||||||||||||||||   |||||||||||     
T  9770113 ttgttgttaaaatctcgacttaaattctaaaatctaggattttgtgacttttttcaccttcaacgactcaaatccatagtagaatcctaaaatagacaaa 9770212  T
Q  153 atacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtatta 240  Q
    ||  |||||||||||||| |||| |||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||    
T  9770213 atctatcaattttgattgcgattttacgatttcttataaactaagttacttatgactatataccattcataacatatatttagtatta 9770300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 53 - 240
Target Start/End: Original strand, 13023568 - 13023758
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaa-tctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaa--tagac 149  Q
    |||||||||||||| |||||||||| |||||| | |||||||||| ||||||||||||||||||||| ||||||||||||||||||  |||||  ||||     
T  13023568 ttgttgtcaaaatcccaacttaaatcctaaaaatttaggattttgcgactttcttcaccttcaatgactcaaatccatagtagaatcccaaaaaatagat 13023667  T
Q  150 aatatacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtatta 240  Q
    || ||  ||| |||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13023668 aaaatcaatcgattttgattgcgattttacgattttttataaactaagtcatttatgactatataccatttataacatatatttagtatta 13023758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 53 - 239
Target Start/End: Complemental strand, 5362091 - 5361905
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    |||||||||||||| | |||||||| |||||||  ||||||||| ||||||||||| |||||| || ||||||||||||||||||| |||||||| |||     
T  5362091 ttgttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgactttcttcatcttcaacgactcaaatccatagtagaattccaaaataggcaaa 5361992  T
Q  153 atacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtatt 239  Q
    |  |||| |||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  5361991 acccatcgattttgattgagattttacgatttcttataaactaagtcatttatgattatataccatttttaacatatatttagtatt 5361905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 54 - 240
Target Start/End: Original strand, 5375666 - 5375852
Alignment:
Q  54 tgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaata 153  Q
    ||||||||||||| |||| ||||||||||||| || ||||||| |||||||||||||||||| || | |||| |||| |||||||| ||||||||||| |    
T  5375666 tgttgtcaaaatcccaacctaaattctaaaatttaagattttgcgactttcttcaccttcaacgactaaaattcataatagaattttaaaatagacaaaa 5375765  T
Q  154 tacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtatta 240  Q
    | |||| | |||||||| |||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  5375766 ttcatcgactttgattgcgattttacgatttcttataaactaagtcatttatgaccatatatcatttataacatatatttagtatta 5375852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 53 - 241
Target Start/End: Original strand, 10142900 - 10143088
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    ||||||| |||||| | |||||||||||||||| ||  |||||| |||||||| |||||||||||| |||| ||||||||| |||| ||||||||||||     
T  10142900 ttgttgtgaaaatcccgacttaaattctaaaatttaatattttgcgactttctccaccttcaatgactcaagtccatagtataattccaaaatagacaaa 10142999  T
Q  153 atacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtattat 241  Q
    || |||| ||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||| |||||| ||||||||||||||||    
T  10143000 atccatcgattttgattgtgattttacgatttcttataaatcaagtcatttatgactatataccaattataatatatatttagtattat 10143088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 57 - 239
Target Start/End: Original strand, 8889233 - 8889415
Alignment:
Q  57 tgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaatatac 156  Q
    |||||||||| | |||||||| |||||||| ||||||||| || |||||||||| |||| || |||||| |||| ||||||  |||||||| ||| || |    
T  8889233 tgtcaaaatcccgacttaaatcctaaaatccaggattttgtgaatttcttcaccatcaacgactcaaattcataatagaatcccaaaataggcaaaattc 8889332  T
Q  157 atcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtatt 239  Q
    ||| |||||||||| |||| ||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||    
T  8889333 atcgattttgattgcgattttacgatttcttataaaccaagtcgtttatgactatataccatttataatatatatttagtatt 8889415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 53 - 241
Target Start/End: Original strand, 36120825 - 36121013
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    |||||||||||||  | | ||||||| |||||| |||||||||| || ||||||||||||||| || | ||||||||| || ||||  ||||||  |||     
T  36120825 ttgttgtcaaaattccgatttaaattttaaaatttaggattttgcgattttcttcaccttcaacgacttaaatccataataaaattctaaaataagcaaa 36120924  T
Q  153 atacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtattat 241  Q
    || |||| |||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  36120925 attcatcgattttgattgcgattttacgatttcttatatactaagtcatttatgactatataccatttataaaatatatttagtattat 36121013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 51 - 241
Target Start/End: Original strand, 17466078 - 17466268
Alignment:
Q  51 gtttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagaca 150  Q
    |||||||||||||||  ||||||||||  |||||| |||||||||| || |||||||| ||| || || ||||||||||| ||||||   ||||||  ||    
T  17466078 gtttgttgtcaaaattccaacttaaatcttaaaatttaggattttgcgattttcttcatctttaaggactcaaatccataatagaatcctaaaataagca 17466177  T
Q  151 atatacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtattat 241  Q
    | || |||| |||| ||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  17466178 aaatccatcgatttagattgcgattttacgatttctaataaactaagtcatttatgactatataccatttataacatatatttaatattat 17466268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 53 - 205
Target Start/End: Complemental strand, 13551750 - 13551598
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    |||||||||||||||| ||||| || ||||||| |||||||||| |||||| ||||||||||| || ||||||||||| ||||||||||||||||||||     
T  13551750 ttgttgtcaaaatctcgacttatatcctaaaatttaggattttgcgacttttttcaccttcaacgactcaaatccatattagaatttcaaaatagacaaa 13551651  T
Q  153 atacatcaattttgattgtgattctacgatttcttataaactaagtcatttat 205  Q
    || |||| ||||| |||| |||| || ||||||||||||||||||||||||||    
T  13551650 atccatcgattttaattgcgattttatgatttcttataaactaagtcatttat 13551598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 90 - 241
Target Start/End: Complemental strand, 9911502 - 9911351
Alignment:
Q  90 gattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaatatacatcaattttgattgtgattctacgatttcttat 189  Q
    |||||||  ||||||||||||||||| |    ||||||||||||||||   ||||| | ||| || |||| |||||||||| |||| |||||||||||||    
T  9911502 gattttgcaactttcttcaccttcaacggcctaaatccatagtagaatcctaaaattggcaaaatccatcgattttgattgcgattttacgatttcttat 9911403  T
Q  190 aaactaagtcatttatgactatataccatttataacatatatttagtattat 241  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  9911402 aaactaagtcatttatgactatataccatttataacatatattaagtattat 9911351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 98 - 241
Target Start/End: Original strand, 37240304 - 37240446
Alignment:
Q  98 gactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaatatacatcaattttgattgtgattctacgatttcttataaactaag 197  Q
    |||||| ||||||||||| || |||||||||||||||||   |||||||| ||  || |||| |||||||||| |||| |||||||||||||||| ||||    
T  37240304 gacttttttcaccttcaacgactcaaatccatagtagaacc-caaaataggcataattcatcgattttgattgcgattttacgatttcttataaattaag 37240402  T
Q  198 tcatttatgactatataccatttataacatatatttagtattat 241  Q
    |||||||||||| ||||||||||||| |||||||||||||||||    
T  37240403 tcatttatgactctataccatttatatcatatatttagtattat 37240446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 53 - 241
Target Start/End: Complemental strand, 23065091 - 23064901
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    ||||||| |||| | | ||||||||||||||||| || ||||||  ||||||||||| ||||| || |||||||||| ||||||||  |||||||   |     
T  23065091 ttgttgttaaaaccccgacttaaattctaaaatccagtattttgtaactttcttcacattcaacgactcaaatccattgtagaattctaaaataggtcaa 23064992  T
Q  153 atacatcaattttgattgtgattctacgatttcttataaac--taagtcatttatgactatataccatttataacatatatttagtattat 241  Q
    || |||| ||||| ||||  ||| |||||||||||||||||  |||||||||||||||  |||| ||||||||||||||||||||||||||    
T  23064991 atccatcgattttaattgcaattttacgatttcttataaactataagtcatttatgaccctatatcatttataacatatatttagtattat 23064901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 53 - 185
Target Start/End: Complemental strand, 8011344 - 8011212
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    |||||||||||||| ||||| |||| |||||||  ||||||||| |||||||||||||||||| || ||||||||||||||||||  ||||||   |||     
T  8011344 ttgttgtcaaaatcccaactcaaatcctaaaattcaggattttgcgactttcttcaccttcaacgactcaaatccatagtagaatcccaaaatgagcaaa 8011245  T
Q  153 atacatcaattttgattgtgattctacgatttc 185  Q
    || |||| |||||||||| |||| | |||||||    
T  8011244 attcatcgattttgattgcgattttgcgatttc 8011212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 53 - 137
Target Start/End: Original strand, 24719518 - 24719602
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaat 137  Q
    |||||||||||||||| |||||| |||||||||  | ||||||| |||||| ||||||||||| || |||||||||||| |||||    
T  24719518 ttgttgtcaaaatctcgacttaatttctaaaattcaagattttgcgactttattcaccttcaacgactcaaatccatagcagaat 24719602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 53 - 146
Target Start/End: Original strand, 7044728 - 7044821
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaata 146  Q
    |||||||||||||| | |||||||| |||||||| | |||||||  ||||| ||||||||||| || |||||||||||| |||||  |||||||    
T  7044728 ttgttgtcaaaatcccgacttaaatcctaaaatccatgattttgcaactttattcaccttcaacgactcaaatccatagcagaatcccaaaata 7044821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 131
Target Start/End: Complemental strand, 6347189 - 6347114
Alignment:
Q  56 ttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatag 131  Q
    ||||||||||  |||||||||| |||||||| |||||||||  ||||| || |||||||| || ||||||||||||    
T  6347189 ttgtcaaaattccaacttaaatcctaaaatccaggattttgcaactttatttaccttcaacgactcaaatccatag 6347114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 196 - 241
Target Start/End: Complemental strand, 5846104 - 5846059
Alignment:
Q  196 agtcatttatgactatataccatttataacatatatttagtattat 241  Q
    ||||||||||||| |||||| ||||||||||||||||||| |||||    
T  5846104 agtcatttatgacaatatacaatttataacatatatttagcattat 5846059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 196 - 241
Target Start/End: Complemental strand, 9149709 - 9149664
Alignment:
Q  196 agtcatttatgactatataccatttataacatatatttagtattat 241  Q
    |||||||||| ||||||||| ||||||||||||||||||| |||||    
T  9149709 agtcatttataactatatacaatttataacatatatttagcattat 9149664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 137
Target Start/End: Original strand, 4156764 - 4156848
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaat 137  Q
    |||||||||||||| | ||||||||  |||||| |||||||||  |||||| |||||||| || || |||||||  |||||||||    
T  4156764 ttgttgtcaaaatcccgacttaaatcttaaaatttaggattttatgactttattcacctttaacgactcaaatctgtagtagaat 4156848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 241
Target Start/End: Original strand, 7825186 - 7825238
Alignment:
Q  189 taaactaagtcatttatgactatataccatttataacatatatttagtattat 241  Q
    |||||| |||||||||||||||||||| ||||||||| | ||||||| |||||    
T  7825186 taaactgagtcatttatgactatatacaatttataacttgtatttagcattat 7825238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 241
Target Start/End: Complemental strand, 8011129 - 8011077
Alignment:
Q  189 taaactaagtcatttatgactatataccatttataacatatatttagtattat 241  Q
    |||||||| |||||||| | ||||||| ||||||||||||||||||| |||||    
T  8011129 taaactaattcatttataattatatacaatttataacatatatttagcattat 8011077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 132
Target Start/End: Original strand, 7452421 - 7452499
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagt 132  Q
    ||||||| |||||| | ||||||||||||||||| || ||||||  ||||| ||||||||||| || || ||||||||||    
T  7452421 ttgttgtgaaaatcccgacttaaattctaaaatccagaattttgcaactttattcaccttcaacgactc-aatccatagt 7452499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 234
Target Start/End: Original strand, 18403672 - 18403710
Alignment:
Q  196 agtcatttatgactatataccatttataacatatattta 234  Q
    ||||||| |||||||||||| ||||||||||||||||||    
T  18403672 agtcattcatgactatatacaatttataacatatattta 18403710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 234
Target Start/End: Original strand, 24719722 - 24719756
Alignment:
Q  200 atttatgactatataccatttataacatatattta 234  Q
    |||||||||||||||| ||||||||||||||||||    
T  24719722 atttatgactatatacaatttataacatatattta 24719756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 234
Target Start/End: Original strand, 7045078 - 7045123
Alignment:
Q  189 taaactaagtcatttatgactatataccatttataacatatattta 234  Q
    |||||| |||||||||| ||||||||| | ||||||||||||||||    
T  7045078 taaactgagtcatttatcactatatacaaattataacatatattta 7045123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 241
Target Start/End: Original strand, 8409725 - 8409770
Alignment:
Q  196 agtcatttatgactatataccatttataacatatatttagtattat 241  Q
    ||||||||||||||||||   ||||||||||||||||||| |||||    
T  8409725 agtcatttatgactatatgtaatttataacatatatttagcattat 8409770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 233
Target Start/End: Original strand, 55476119 - 55476156
Alignment:
Q  196 agtcatttatgactatataccatttataacatatattt 233  Q
    |||||||||||||||||| | |||||||||||||||||    
T  55476119 agtcatttatgactatatgcaatttataacatatattt 55476156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 225
Target Start/End: Original strand, 7815783 - 7815819
Alignment:
Q  189 taaactaagtcatttatgactatataccatttataac 225  Q
    |||||| |||||||||||||||||||| |||||||||    
T  7815783 taaactgagtcatttatgactatatacaatttataac 7815819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 137
Target Start/End: Complemental strand, 18459836 - 18459752
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaat 137  Q
    ||||||| |||||| | ||| |||| |||||||| | ||||||| |||| | ||||| ||||| || |||||||||||| |||||    
T  18459836 ttgttgtaaaaatcccgactaaaatcctaaaatccaagattttgcgactgtattcactttcaacgactcaaatccatagcagaat 18459752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 53 - 241
Target Start/End: Complemental strand, 26053424 - 26053236
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    |||||||||||||| | ||||||||  ||||||||||||||||| ||||||||||||||||||||| |||||| |||| ||||||  |||||||  |||     
T  26053424 ttgttgtcaaaatcccgacttaaatcttaaaatctaggattttgcgactttcttcaccttcaatgactcaaattcataatagaatcccaaaataagcaaa 26053325  T
Q  153 atacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtattat 241  Q
    || |||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  26053324 atccatcaattttgattgtcattttacgatttcttataaactaagttatttatgactatataccatttataacatatagttagtattat 26053236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 53 - 241
Target Start/End: Complemental strand, 26073477 - 26073289
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    |||||||||||||| | ||||||||  ||||||||||||||||| ||||||||||||||||||||| |||||| |||| ||||||  |||||||  |||     
T  26073477 ttgttgtcaaaatcccgacttaaatcttaaaatctaggattttgcgactttcttcaccttcaatgactcaaattcataatagaatcccaaaataagcaaa 26073378  T
Q  153 atacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtattat 241  Q
    || |||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  26073377 atccatcaattttgattgtcattttacgatttcttataaactaagttatttatgactatataccatttataacatatagttagtattat 26073289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 53 - 241
Target Start/End: Complemental strand, 30912540 - 30912352
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    |||||||||||||| |||||||||| ||||||| |||||||||| |||||||||||||||||| || ||||||||||| ||||||  |||||||| |||     
T  30912540 ttgttgtcaaaatcccaacttaaatcctaaaatttaggattttgcgactttcttcaccttcaacgactcaaatccataatagaatcacaaaataggcaaa 30912441  T
Q  153 atacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtattat 241  Q
    || |||  |||||||||| |||| ||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||    
T  30912440 atccatagattttgattgcgattttacgatttcttataaactaagtcatttatgattatatatcatttatcacatatatttagtattat 30912352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 53 - 240
Target Start/End: Complemental strand, 15528238 - 15528051
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    |||||||||||||| | |||||||| |||||||  ||||||||| ||||||||||||||| || || | |||| ||||||||||| | |||||||||||     
T  15528238 ttgttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgactttcttcacctttaacgacttaaattcatagtagaatcttaaaatagacaaa 15528139  T
Q  153 atacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtatta 240  Q
    || |||| |||| ||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  15528138 atccatcgatttcgattgcgattttacgatttcttataaactaagtcatttataactatataccatttataacatatatttagtatta 15528051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 53 - 241
Target Start/End: Original strand, 19748334 - 19748522
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    ||||| |||||||| | ||||||||  || |||| |||||||||||| |||||||||||| ||||| |||||||| ||||||||| | ||||||| |||     
T  19748334 ttgttttcaaaatcccgacttaaatcttacaatccaggattttgagattttcttcacctttaatgactcaaatccgtagtagaatcttaaaataggcaaa 19748433  T
Q  153 atacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtattat 241  Q
    || |||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||    
T  19748434 attcatcgattttgattgtgattttacgatttcttataaactaagtcatttaagactatatatcatttataaaatatatttagtattat 19748522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 70 - 239
Target Start/End: Original strand, 23897829 - 23897998
Alignment:
Q  70 acttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaatatacatcaattttgatt 169  Q
    |||||||| |||||||  ||||||||| |||||||||||| ||||| || |||||||||||||| ||||  ||||||| | | || |||| |||||||||    
T  23897829 acttaaatcctaaaatgcaggattttgcgactttcttcacgttcaacgactcaaatccatagtaaaattctaaaataggcgaaatccatcgattttgatt 23897928  T
Q  170 gtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtatt 239  Q
    | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23897929 gcgattttacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtatt 23897998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 53 - 241
Target Start/End: Complemental strand, 17543868 - 17543680
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    |||||||||||||||| |||||||| |||||||  ||||||||| |||||| ||||| ||||| || |||||||||||||||||| | ||||||  |||     
T  17543868 ttgttgtcaaaatctcgacttaaatcctaaaattcaggattttgcgacttttttcactttcaacgactcaaatccatagtagaatcttaaaataagcaaa 17543769  T
Q  153 atacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtattat 241  Q
    ||  ||  |||||||||| |||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  17543768 atctatggattttgattgcgattttactatttcttataaactaagtcatttacgactatataccatttataacatatatttagtattat 17543680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 53 - 232
Target Start/End: Original strand, 7223520 - 7223692
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    |||||||||||||| | |||||||| ||||||| |||||||||| ||||||||||||||        | ||||||||||||||||| |||||||  |||     
T  7223520 ttgttgtcaaaatcccgacttaaatcctaaaatttaggattttgcgactttcttcacctc-------ttaaatccatagtagaattccaaaataagcaaa 7223612  T
Q  153 atacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatt 232  Q
    || |||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7223613 atccatcgattttgattgcgattttacgatttcttataaactaagtcatttatgactatataccatttataacatatatt 7223692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 53 - 234
Target Start/End: Original strand, 17250058 - 17250238
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    ||||||| |||||| | |||||||| |||||||| |||||||||  ||||||||||||||||| || | ||||||||| ||||||  |||||||| |||     
T  17250058 ttgttgttaaaatcccgacttaaatcctaaaatccaggattttgcaactttcttcaccttcaacgacttaaatccatactagaatcccaaaataggcaaa 17250157  T
Q  153 atacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatattta 234  Q
    || |||  |||||||||| |||| ||||||||||||||||||||||||||||||||||||||  |||||||| |||||||||    
T  17250158 attcattgattttgattgcgattttacgatttcttataaactaagtcatttatgactatata-aatttataatatatattta 17250238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 98 - 240
Target Start/End: Original strand, 21354786 - 21354928
Alignment:
Q  98 gactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaatatacatcaattttgattgtgattctacgatttcttataaactaag 197  Q
    ||||||||| |||||||| || | |||||||| |||||||  |||||||||||| || ||||  |||| |||| |||| |||||||||||||||||||||    
T  21354786 gactttctttaccttcaacgacttaaatccatggtagaatcccaaaatagacaaaatccatcgttttttattgcgattttacgatttcttataaactaag 21354885  T
Q  198 tcatttatgactatataccatttataacatatatttagtatta 240  Q
    | |||||||||||||||||||||||||||||||||||||||||    
T  21354886 taatttatgactatataccatttataacatatatttagtatta 21354928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 60 - 223
Target Start/End: Complemental strand, 22499006 - 22498843
Alignment:
Q  60 caaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaatatacatc 159  Q
    ||||||| ||||| |||| ||||| || |  |||||| ||||||||||||||| || || |||||||||||||| ||| ||||||||||||| || ||||    
T  22499006 caaaatcccaactaaaatcctaaattccacaattttgcgactttcttcaccttgaacgactcaaatccatagtacaatctcaaaatagacaaaatccatc 22498907  T
Q  160 aattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttata 223  Q
     ||||| ||||  ||| ||||||||||||||||| |||||||||||||||||||||||| ||||    
T  22498906 gattttaattgcaattttacgatttcttataaacgaagtcatttatgactatataccatctata 22498843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 53 - 224
Target Start/End: Complemental strand, 7918509 - 7918338
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    |||||||||||||| | ||||||||||||||||  ||||||||| |||||| ||||||||||| || | |||||||||||| |||   || |||  |||     
T  7918509 ttgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgacttttttcaccttcaacgacttaaatccatagtaaaatcctaacataagcaaa 7918410  T
Q  153 atacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataa 224  Q
    ||  ||| |||||||||| |||| | |||||| ||||||| ||||||||||||||||||||| |||||||||    
T  7918409 atcaatcgattttgattgggattttgcgattttttataaattaagtcatttatgactatatatcatttataa 7918338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 53 - 175
Target Start/End: Complemental strand, 6943588 - 6943466
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    |||||||||||||| | |||||||| |||||||  ||||||||| |||||||||||||||||| || ||||||| |||||||||| |||||||||||||     
T  6943588 ttgttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgactttcttcaccttcaacgactcaaatcgatagtagaatctcaaaatagacaaa 6943489  T
Q  153 atacatcaattttgattgtgatt 175  Q
    || |||| |||||||||| ||||    
T  6943488 attcatcgattttgattgcgatt 6943466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 53 - 234
Target Start/End: Complemental strand, 11327699 - 11327518
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    |||||||||||||| | |||||||  |||||||| | | ||||| |  |||||||| |||||| || | ||||||||||||||||  |||||||| |||     
T  11327699 ttgttgtcaaaatcccgacttaaaacctaaaatccaaggttttgcggttttcttcatcttcaaggacttaaatccatagtagaatcccaaaataggcaaa 11327600  T
Q  153 atacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatattta 234  Q
    || |||| ||||| |||| |||| |||| |||||||| |||||| |||||||||||| |||||||||||| |||| ||||||    
T  11327599 attcatcgattttaattgcgattttacgttttcttatgaactaattcatttatgactgtataccatttatcacatgtattta 11327518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 111 - 240
Target Start/End: Original strand, 17103254 - 17103383
Alignment:
Q  111 ttcaatgagtcaaatccatagtagaatttcaaaatagacaatatacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgacta 210  Q
    ||||| || |||||| |||||||||||  |||||||||||| || |||| |||||||||  |||| |||||||||||||||||||||| ||||| |||||    
T  17103254 ttcaacgactcaaatgcatagtagaatcccaaaatagacaaaatccatcgattttgattacgattttacgatttcttataaactaagttatttacgacta 17103353  T
Q  211 tataccatttataacatatatttagtatta 240  Q
    |||| ||||||| ||||||||||| |||||    
T  17103354 tatatcatttatgacatatatttattatta 17103383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 53 - 190
Target Start/End: Complemental strand, 27233405 - 27233268
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    ||||||||||| |  | |||||||| |||||||| ||||||||| |||||||||||||||||| || | ||||||||||||||||  ||||||||||||     
T  27233405 ttgttgtcaaactaccgacttaaatcctaaaatccaggattttgtgactttcttcaccttcaacgacttaaatccatagtagaatcccaaaatagacaaa 27233306  T
Q  153 atacatcaattttgattgtgattctacgatttcttata 190  Q
    || |||| |||||||||| |||| || |||||||||||    
T  27233305 atccatcgattttgattgcgattttatgatttcttata 27233268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 56 - 241
Target Start/End: Complemental strand, 10509148 - 10508958
Alignment:
Q  56 ttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaatata 155  Q
    |||||||||||   |||||||| |||||||  || | |||| |||||||||||| |||||||| ||||||  ||||||||||  |||||||| ||| ||     
T  10509148 ttgtcaaaatccagacttaaatcctaaaattcagaaatttgtgactttcttcacattcaatgactcaaatttatagtagaatcccaaaataggcaaaatt 10509049  T
Q  156 catcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatatac------catttataacatatatttagtattat 241  Q
    |||| |||||||||  |||| ||||| || |||||||||||||||||||| |||||||||      ||||||||||||||||||| ||||||    
T  10509048 catcgattttgattacgattttacgacttattataaactaagtcatttat-actatatacctaagtcatttataacatatatttattattat 10508958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 55 - 211
Target Start/End: Complemental strand, 2912373 - 2912218
Alignment:
Q  55 gttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaatat 154  Q
    |||||||||||| | ||||||||  |||||| ||||||||||  ||||||| || |||||| || ||||||| |||||||||| | ||||||  ||| ||    
T  2912373 gttgtcaaaatcccgacttaaatcttaaaatttaggattttgcaactttctccatcttcaacgattcaaatc-atagtagaatcttaaaataagcaaaat 2912275  T
Q  155 acatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactat 211  Q
     |||| ||||||||||  ||| |||||||| |||||||| |||||||||||||||||    
T  2912274 tcatcgattttgattgcaattttacgattttttataaacaaagtcatttatgactat 2912218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 186 - 241
Target Start/End: Complemental strand, 7918343 - 7918288
Alignment:
Q  186 ttataaactaagtcatttatgactatataccatttataacatatatttagtattat 241  Q
    ||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  7918343 ttataaattaagtcatttatgactatatatcatttataacataaatttagtattat 7918288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 27614648 - 27614594
Alignment:
Q  177 tacgatttcttataaacta--agtcatttatgactatataccatttataacatat 229  Q
    |||||||||||||||||||  | ||||||||||||||||||||||||||||||||    
T  27614648 tacgatttcttataaactataattcatttatgactatataccatttataacatat 27614594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 129
Target Start/End: Complemental strand, 3574043 - 3573984
Alignment:
Q  70 acttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccat 129  Q
    ||||||||||||||||| || |||| | |||||||||||||||||| || ||||||||||    
T  3574043 acttaaattctaaaatccagaatttcgcgactttcttcaccttcaacgactcaaatccat 3573984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 196 - 241
Target Start/End: Original strand, 645417 - 645462
Alignment:
Q  196 agtcatttatgactatataccatttataacatatatttagtattat 241  Q
    |||||||||||||||||| | ||||||||||||||||||| |||||    
T  645417 agtcatttatgactatatgcaatttataacatatatttagcattat 645462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 5422644 - 5422600
Alignment:
Q  197 gtcatttatgactatataccatttataacatatatttagtattat 241  Q
    ||||||||||||||||||  ||||||||||||||||||| |||||    
T  5422644 gtcatttatgactatatataatttataacatatatttagcattat 5422600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 137
Target Start/End: Complemental strand, 18491161 - 18491081
Alignment:
Q  57 tgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaat 137  Q
    |||||||||| | |||||||| |||||||| || ||||||   |||| ||||||||||| || |||||||||||| |||||    
T  18491161 tgtcaaaatcccgacttaaatcctaaaatccagaattttgcatctttattcaccttcaacgactcaaatccatagcagaat 18491081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 241
Target Start/End: Complemental strand, 27233271 - 27233239
Alignment:
Q  209 tatataccatttataacatatatttagtattat 241  Q
    |||||||||||||||||||||||||||||||||    
T  27233271 tatataccatttataacatatatttagtattat 27233239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 147
Target Start/End: Complemental strand, 4597279 - 4597185
Alignment:
Q  52 tttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatag 147  Q
    ||||||||||||||| ||| |||||| || |||| |||||||||| |||||| |||| ||| || || |||||| ||| | ||||||| |||||||    
T  4597279 tttgttgtcaaaatcacaatttaaatcct-aaatttaggattttgtgactttattcatctttaacgattcaaattcattgcagaatttaaaaatag 4597185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 18491064 - 18491005
Alignment:
Q  78 tctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaat 137  Q
    ||||||||| || ||||||  ||||| |||||||||||||| |||||||||||| |||||    
T  18491064 tctaaaatccagcattttgcaactttattcaccttcaatgactcaaatccatagcagaat 18491005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 241
Target Start/End: Original strand, 27890519 - 27890562
Alignment:
Q  198 tcatttatgactatataccatttataacatatatttagtattat 241  Q
    |||||||||||||||| | ||||||||||||||||||| |||||    
T  27890519 tcatttatgactatatgcaatttataacatatatttagcattat 27890562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 131
Target Start/End: Complemental strand, 5422876 - 5422798
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatag 131  Q
    |||||||||||||| | |||||||| |||||||  | |||||||  ||||| ||||||||||| || ||||||| ||||    
T  5422876 ttgttgtcaaaatcccgacttaaatactaaaattcatgattttgcaactttattcaccttcaacgactcaaatctatag 5422798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 6e-58; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 53 - 218
Target Start/End: Original strand, 29067285 - 29067450
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    |||||||||||||| | ||||||||||||||||  ||||||||| |||||||||||||||||| || ||||||||||||||||||  ||||||||||||     
T  29067285 ttgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttcaccttcaacgactcaaatccatagtagaatcccaaaatagacaaa 29067384  T
Q  153 atacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccat 218  Q
    || |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  29067385 atccatcgattttgattgtgattttacgatttcttataaactaagtcatttatgactatataccat 29067450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 53 - 241
Target Start/End: Complemental strand, 8156259 - 8156070
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaat-agacaa 151  Q
    |||||||||||||| ||||||||||||||||||  || |||||  || ||| |||||||||||||| |||||||||||||| |||  |||||| ||||||    
T  8156259 ttgttgtcaaaatcccaacttaaattctaaaattcagaattttacgatttttttcaccttcaatgactcaaatccatagtataatcccaaaattagacaa 8156160  T
Q  152 tatacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtattat 241  Q
     || |||| |||||||||| |||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  8156159 aatccatcgattttgattgcgattttacgatttcttataaactaagttatttataactatataccatttataacatatatttagtattat 8156070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 53 - 240
Target Start/End: Original strand, 28745771 - 28745964
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    |||||||||||||| | | |||||| ||||||| |||||||||| |||||||||||||||||| || |||||| ||||||||||| |||||||||||||     
T  28745771 ttgttgtcaaaatcccgatttaaatcctaaaatttaggattttgcgactttcttcaccttcaacgactcaaattcatagtagaatctcaaaatagacaaa 28745870  T
Q  153 atacatcaattttgattgtgattctacgatttc------ttataaactaagtcatttatgactatataccatttataacatatatttagtatta 240  Q
    || |||| |||||||||| |||| |||||||||      |||||||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  28745871 attcatcgattttgattgcgattttacgatttcttataattataaactaagtcatttatgactatatactatttataacatatatttactatta 28745964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 55 - 240
Target Start/End: Original strand, 39427905 - 39428090
Alignment:
Q  55 gttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaatat 154  Q
    |||||||||||| | | ||||||| |||||||  ||||||||  ||||||||||| ||||| || ||||||| ||||||||||  ||||||||||||  |    
T  39427905 gttgtcaaaatcccgatttaaattttaaaatcctggattttgcaactttcttcacgttcaacgactcaaatcgatagtagaatcccaaaatagacaaagt 39428004  T
Q  155 acatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtatta 240  Q
     |||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  39428005 ccatcgattttgattgcgattttacgatttcttataaactaagtcatttatgactatatactacttataacatatatttagtatta 39428090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 53 - 239
Target Start/End: Complemental strand, 24620331 - 24620142
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagac---tttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagac 149  Q
    |||||||||||||  | |||||||| ||||||| || ||||||| |||   ||||||||||||||| || |||||| || |||||||| ||||||||| |    
T  24620331 ttgttgtcaaaattccgacttaaatcctaaaatttaagattttgcgacgactttcttcaccttcaacgactcaaattcacagtagaatctcaaaataggc 24620232  T
Q  150 aatatacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtatt 239  Q
    || || |||| ||||| ||||  ||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  24620231 aaaattcatcgattttaattgcaattttacgatttcttataaactaagtcatttatgattatataccatttataaaatatatttagtatt 24620142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 125 - 239
Target Start/End: Original strand, 42696920 - 42697034
Alignment:
Q  125 tccatagtagaatttcaaaatagacaatatacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataa 224  Q
    ||||||||||||| ||||||||| ||| || |||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  42696920 tccatagtagaatctcaaaataggcaaaattcatcgattttgattgcgattttacgatttcttataaactaagtcatttatgactatataccatttataa 42697019  T
Q  225 catatatttagtatt 239  Q
    ||||||||| |||||    
T  42697020 catatatttggtatt 42697034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 53 - 205
Target Start/End: Original strand, 20756040 - 20756192
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    |||||||||||||| | ||||||||| ||||||  ||||||||| || |||||||||||||||||| |||||||||||||||||| | ||||||| |||     
T  20756040 ttgttgtcaaaatcccgacttaaattataaaattcaggattttgcgattttcttcaccttcaatgactcaaatccatagtagaatcttaaaataggcaaa 20756139  T
Q  153 atacatcaattttgattgtgattctacgatttcttataaactaagtcatttat 205  Q
    ||  ||| ||||||||||  ||| |||||||||||||||||||||||||||||    
T  20756140 atcaatcgattttgattgcaattttacgatttcttataaactaagtcatttat 20756192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 57 - 214
Target Start/End: Original strand, 17064326 - 17064483
Alignment:
Q  57 tgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaatatac 156  Q
    |||||||||| | ||||||||  ||||||  ||||||||| || | | ||||||||||| || || ||| ||||||||||||  ||||||||||| || |    
T  17064326 tgtcaaaatcccgacttaaatcttaaaattcaggattttgcgattgtgttcaccttcaacgactccaattcatagtagaattctaaaatagacaaaattc 17064425  T
Q  157 atcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatata 214  Q
    ||| ||||| |||| |||| ||||||||||||||||||||||||||||||||||||||    
T  17064426 atcgatttttattgcgattttacgatttcttataaactaagtcatttatgactatata 17064483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 68 - 238
Target Start/End: Complemental strand, 22494894 - 22494731
Alignment:
Q  68 caacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaatatacatcaattttga 167  Q
    |||||||||| |||||||||  ||||||| |||||| ||||||||||| || | |||| |||||||||||   |||||| |||| || |||| |||||||    
T  22494894 caacttaaatcctaaaatctgagattttgcgacttttttcaccttcaacgactaaaattcatagtagaatcctaaaataaacaaaattcatcgattttga 22494795  T
Q  168 ttgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtat 238  Q
    ||| |||| ||||||       ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  22494794 ttgcgattttacgat-------aaactaagtcagttatgactatataccatttataacatatatttagtat 22494731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 53 - 185
Target Start/End: Complemental strand, 24649817 - 24649684
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaataga-caa 151  Q
    |||||||||||||| | ||||||||  ||||||||||||||||  ||||| |||||||||||| || ||||||||||||||||||| ||||||| | |||    
T  24649817 ttgttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaattccaaaataaagcaa 24649718  T
Q  152 tatacatcaattttgattgtgattctacgatttc 185  Q
     || |||||||||||| ||||||| |||||||||    
T  24649717 aattcatcaattttgactgtgattttacgatttc 24649684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 178 - 241
Target Start/End: Complemental strand, 15515259 - 15515196
Alignment:
Q  178 acgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtattat 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15515259 acgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtattat 15515196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 98 - 241
Target Start/End: Original strand, 22137324 - 22137465
Alignment:
Q  98 gactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaatatacatcaattttgattgtgattctacgatttcttataaactaag 197  Q
    ||||||||||||||| || |  |||||||||||||| |||  |||||||  ||| || |||| ||||| |||| |||| | |||||||||||  ||||||    
T  22137324 gactttcttcaccttgaacgcctcaaatccatagtaaaatcccaaaatatgcaaaatccatcgattttaattgcgatttt-cgatttcttatttactaag 22137422  T
Q  198 tcatttatgactatataccatttataacatatatttagtattat 241  Q
    |||||||||||||||||| ||||||||| |||||||||||||||    
T  22137423 tcatttatgactatatactatttataac-tatatttagtattat 22137465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 52 - 208
Target Start/End: Complemental strand, 3449420 - 3449265
Alignment:
Q  52 tttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaa 151  Q
    ||||||||||||||| | |||||||| |||||||  ||||||||| ||||||||| |||||||| |  | ||||| ||||||||||   ||||||| |||    
T  3449420 tttgttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgactttctttaccttcaacg-ctaaaatctatagtagaatcctaaaataggcaa 3449322  T
Q  152 tatacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgac 208  Q
     || |||  ||||| |||| |||| |||||||||||||||| |||||||||| ||||    
T  3449321 aatccatagatttttattgcgattttacgatttcttataaagtaagtcatttgtgac 3449265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 61 - 241
Target Start/End: Original strand, 21963438 - 21963618
Alignment:
Q  61 aaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaatatacatca 160  Q
    |||||| | |||||||| |||||||  | ||||||  ||||||||||||||| || || |||||||||||||| |||   ||||||  ||| || ||||     
T  21963438 aaaatcccgacttaaatcctaaaattcaagattttacgactttcttcaccttgaacgactcaaatccatagtaaaatcctaaaatatgcaaaatccatcg 21963537  T
Q  161 attttgattgtgattctacgatttcttataaactaagtcatttatgac--tatataccatttataacatatatttagtattat 241  Q
    |||||||| | |||| | |||||||||||  |||||||||||||||||  ||||||| ||||||||| |||||||||||||||    
T  21963538 attttgatagcgatt-ttcgatttcttatttactaagtcatttatgactatatatactatttataac-tatatttagtattat 21963618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 61 - 241
Target Start/End: Original strand, 21985874 - 21986054
Alignment:
Q  61 aaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaatatacatca 160  Q
    |||||| | |||||||| |||||||  | ||||||  ||||||||||||||| || || |||||||||||||| |||   ||||||  ||| || ||||     
T  21985874 aaaatcccgacttaaatcctaaaattcaagattttacgactttcttcaccttgaacgactcaaatccatagtaaaatcctaaaatatgcaaaatccatcg 21985973  T
Q  161 attttgattgtgattctacgatttcttataaactaagtcatttatgac--tatataccatttataacatatatttagtattat 241  Q
    |||||||| | |||| | |||||||||||  |||||||||||||||||  ||||||| ||||||||| |||||||||||||||    
T  21985974 attttgatagcgatt-ttcgatttcttatttactaagtcatttatgactatatatactatttataac-tatatttagtattat 21986054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 175
Target Start/End: Complemental strand, 30727819 - 30727697
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    ||||| ||||||||   ||||||||  |||||||  | |||||  |||||||||||||||||| || ||||||| ||||||||||  ||||||||||||     
T  30727819 ttgttatcaaaatcctgacttaaatcttaaaatcctgaattttacgactttcttcaccttcaacgactcaaatctatagtagaatcccaaaatagacaaa 30727720  T
Q  153 atacatcaattttgattgtgatt 175  Q
    || |||| |||||||||| ||||    
T  30727719 attcatcgattttgattgcgatt 30727697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 53 - 198
Target Start/End: Complemental strand, 25870504 - 25870350
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttc----aatgagtcaaatccatagtagaatttcaaaataga 148  Q
    |||||||||||||||| |||||||| |||||||| | ||||||| ||||||||||| ||||    || || |||||| | ||||||||  |||||||||     
T  25870504 ttgttgtcaaaatctcgacttaaatcctaaaatccaagattttgtgactttcttcatcttcaacgaacgactcaaattcgtagtagaacctcaaaatagg 25870405  T
Q  149 caatatacatc-----aattttgattgtgattctacgatttcttataaactaagt 198  Q
    ||| || ||||      |||||||||| |||| |||||||||||||||| |||||    
T  25870404 caaaatccatcgatttgattttgattgcgattttacgatttcttataaattaagt 25870350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 53 - 137
Target Start/End: Complemental strand, 15806633 - 15806550
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaat 137  Q
    |||||||||||||| | |||||||| ||| |||| || |||||| |||||| |||||||||||||| |||||||||||| |||||    
T  15806633 ttgttgtcaaaatc-cgacttaaatcctacaatccagaattttgcgactttattcaccttcaatgactcaaatccatagcagaat 15806550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 53 - 147
Target Start/End: Original strand, 27676357 - 27676451
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatag 147  Q
    ||||||||||||||   ||||||||  ||||||  ||||||||| |||||| ||||||||| |||| |||||||||||| |||||  ||||||||    
T  27676357 ttgttgtcaaaatcctgacttaaatcgtaaaatgcaggattttgcgactttattcaccttctatgactcaaatccatagcagaatcccaaaatag 27676451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 204
Target Start/End: Complemental strand, 22356106 - 22356029
Alignment:
Q  127 catagtagaatttcaaaatagacaatatacatcaattttgattgtgattctacgatttcttataaactaagtcattta 204  Q
    |||||||||||   ||||||  ||| || ||| ||||||||||| |||| ||||||||||||||||||||||||||||    
T  22356106 catagtagaatcctaaaataagcaaaatccatgaattttgattgcgattttacgatttcttataaactaagtcattta 22356029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 151
Target Start/End: Original strand, 17796272 - 17796367
Alignment:
Q  56 ttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaa 151  Q
    ||||||||||  ||||||||||  ||||||||||||||||| |||||| |||||||||||  | | |||| ||||| |||||   |||||||||||    
T  17796272 ttgtcaaaattccaacttaaatcataaaatctaggattttgtgactttattcaccttcaacaactaaaattcatagcagaatcctaaaatagacaa 17796367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 151
Target Start/End: Original strand, 19104712 - 19104807
Alignment:
Q  56 ttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaa 151  Q
    ||||||||||  ||||||||||  ||||||||||||||||| |||||| |||||||||||  | | |||| ||||| |||||   |||||||||||    
T  19104712 ttgtcaaaattccaacttaaatcataaaatctaggattttgtgactttattcaccttcaacaactaaaattcatagcagaatcctaaaatagacaa 19104807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 9152984 - 9152935
Alignment:
Q  180 gatttcttataaactaagtcatttatgactatataccatttataacatat 229  Q
    ||||||||||||||||||| ||||||||||||||| ||| |||| |||||    
T  9152984 gatttcttataaactaagttatttatgactatatatcatgtatagcatat 9152935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 147
Target Start/End: Complemental strand, 10873053 - 10872980
Alignment:
Q  74 aaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatag 147  Q
    |||| |||||||| ||||||||| ||  || ||||||||||| || |||||||||||| ||||| |||||||||    
T  10873053 aaatcctaaaatccaggattttgtgatattattcaccttcaacgactcaaatccatagcagaatctcaaaatag 10872980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 234
Target Start/End: Complemental strand, 8592399 - 8592359
Alignment:
Q  194 taagtcatttatgactatataccatttataacatatattta 234  Q
    |||||||||||||||||||| | ||||||||||||||||||    
T  8592399 taagtcatttatgactatatgcaatttataacatatattta 8592359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 241
Target Start/End: Complemental strand, 25870294 - 25870262
Alignment:
Q  209 tatataccatttataacatatatttagtattat 241  Q
    |||||||||||||||||||||||||||||||||    
T  25870294 tatataccatttataacatatatttagtattat 25870262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 151
Target Start/End: Original strand, 17796378 - 17796476
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaa 151  Q
    |||||||||||||  | ||||||||  ||||||||||||||||  |||||| |||| ||||||  | |||||| ||||| |||||   |||||||||||    
T  17796378 ttgttgtcaaaattccgacttaaatcataaaatctaggattttacgactttattcatcttcaacaactcaaattcatagcagaatcctaaaatagacaa 17796476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 151
Target Start/End: Original strand, 17796487 - 17796585
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaa 151  Q
    ||||||||||||| || | ||||||  ||||||||||||||||  |||||| |||||||||||  | | |||| ||||| |||||   |||||||||||    
T  17796487 ttgttgtcaaaatttcgaattaaatcataaaatctaggatttttcgactttattcaccttcaacaacttaaattcatagcagaatcctaaaatagacaa 17796585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 151
Target Start/End: Original strand, 19104818 - 19104916
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaa 151  Q
    |||||||||||||  | ||||||||  ||||||||||||||||  |||||| |||| ||||||  | |||||| ||||| |||||   |||||||||||    
T  19104818 ttgttgtcaaaattccgacttaaatcataaaatctaggattttacgactttattcatcttcaacaactcaaattcatagcagaatcctaaaatagacaa 19104916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 151
Target Start/End: Original strand, 19104927 - 19105025
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaa 151  Q
    ||||||||||||| || | ||||||  ||||||||||||||||  |||||| |||||||||||  | | |||| ||||| |||||   |||||||||||    
T  19104927 ttgttgtcaaaatttcgaattaaatcataaaatctaggatttttcgactttattcaccttcaacaacttaaattcatagcagaatcctaaaatagacaa 19105025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 234
Target Start/End: Original strand, 19348684 - 19348722
Alignment:
Q  196 agtcatttatgactatataccatttataacatatattta 234  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  19348684 agtcatttatgactatatgcaatttataacatatattta 19348722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 234
Target Start/End: Original strand, 27676579 - 27676617
Alignment:
Q  196 agtcatttatgactatataccatttataacatatattta 234  Q
    |||||||||||||||||||  ||||||||||||||||||    
T  27676579 agtcatttatgactatatataatttataacatatattta 27676617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 9169806 - 9169842
Alignment:
Q  198 tcatttatgactatataccatttataacatatattta 234  Q
    |||||||||||||||| | ||||||||||||||||||    
T  9169806 tcatttatgactatatgcaatttataacatatattta 9169842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 111; Significance: 4e-56; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 53 - 239
Target Start/End: Original strand, 36429849 - 36430035
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    |||||||||||||| |||||||||| ||| |||||||||||||| |||||||||||||||||| || |||| | ||||| ||||| ||||||||| |||     
T  36429849 ttgttgtcaaaatcccaacttaaatcctataatctaggattttgcgactttcttcaccttcaacgactcaagttcataggagaatctcaaaataggcaaa 36429948  T
Q  153 atacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtatt 239  Q
    || |||| |||||||||| |||| |||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||    
T  36429949 atccatcgattttgattgcgattgtacgatttcttataaactaagtaatttatgactatatatcatttctaacatatatttagtatt 36430035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 53 - 232
Target Start/End: Complemental strand, 31238105 - 31237926
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    |||||||||||||| | |||||||| ||||||||||||||||||  ||||||||||||||||| || |||||| ||||||||||| | |||||||  ||     
T  31238105 ttgttgtcaaaatcccgacttaaatcctaaaatctaggattttgccactttcttcaccttcaacgactcaaattcatagtagaatcttaaaataggaaaa 31238006  T
Q  153 atacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatt 232  Q
    || |||| |||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31238005 atccatcgattttgattgcgattttacgatttcttataaactaagtcatttatgattatataccatttataacatatatt 31237926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 53 - 226
Target Start/End: Original strand, 30432420 - 30432593
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    ||||||||||||||   | ||||||||||||||||||||||||  |||||||||| ||||||| || |||||||||||||||||| |||||||||||||     
T  30432420 ttgttgtcaaaatcctgatttaaattctaaaatctaggatttttcgactttcttcgccttcaacgactcaaatccatagtagaatctcaaaatagacaaa 30432519  T
Q  153 atacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataaca 226  Q
    || |||| ||||||||||  ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30432520 atccatcgattttgattgcaattttacgatttcttataaactaagtcatttattactatataccatttataaca 30432593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 53 - 235
Target Start/End: Original strand, 1404784 - 1404966
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    |||||||||||||| | |||||||||||||||| |||||||||| |||||||||||||||||| || | |||||||| |||||||   ||| ||  |||     
T  1404784 ttgttgtcaaaatcccgacttaaattctaaaatttaggattttgtgactttcttcaccttcaacgacttaaatccattgtagaatcctaaactatgcaaa 1404883  T
Q  153 atacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttag 235  Q
    || |||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||    
T  1404884 atccatcgattttgattgtgattttacgatttcttatatactaagtcatttatgactatacaccatttataacatatacttag 1404966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 52 - 239
Target Start/End: Complemental strand, 35566083 - 35565896
Alignment:
Q  52 tttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaa 151  Q
    ||||||||||||||| ||||||||||   |||||  ||||||||| |||||||||||  |||||||| |||||||||| |||||||  |||||||| |||    
T  35566083 tttgttgtcaaaatcccaacttaaatcacaaaattcaggattttgcgactttcttcatattcaatgactcaaatccatggtagaatcccaaaataggcaa 35565984  T
Q  152 tatacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtatt 239  Q
     || |||| ||||||||||   || ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  35565983 aatccatcgattttgattgcagttttacgatttcttataaacaaagtcatttatgactatatacaatttataacatatatttagtatt 35565896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 54 - 241
Target Start/End: Original strand, 31578007 - 31578193
Alignment:
Q  54 tgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaata 153  Q
    ||||||||||||| | ||||||||  |||||| || ||||||| || ||||||||||||||| || | |||||| |||||||||   ||||||  ||| |    
T  31578007 tgttgtcaaaatcccgacttaaatgttaaaatttaagattttgcgattttcttcaccttcaacgatttaaatcc-tagtagaatcctaaaataagcaaaa 31578105  T
Q  154 tacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtattat 241  Q
    | |||||||||||||||  ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31578106 tccatcaattttgattgcaattttacgatttattataaactaagtcatttatgactatataccatttataacatatatttagtattat 31578193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 88 - 241
Target Start/End: Complemental strand, 15588943 - 15588792
Alignment:
Q  88 aggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaatatacatcaattttgattgtgattctacgatttctt 187  Q
    ||||||||| | ||||||||||||||||  | |||||| ||||||||||| ||||||||||||| ||  |||  |||| |||| |||| ||||||||| |    
T  15588943 aggattttgcgtctttcttcaccttcaacaactcaaatacatagtagaatctcaaaatagacaaaatcaatcgttttttattgcgattttacgatttcat 15588844  T
Q  188 ataaactaagtcatttatgactatataccatttataacatatatttagtattat 241  Q
    |||||||||||||||||||| ||||||||||||||  |||||||||||||||||    
T  15588843 ataaactaagtcatttatgattatataccatttat--catatatttagtattat 15588792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 53 - 234
Target Start/End: Original strand, 20063715 - 20063896
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    |||||||||||||| | |||||||  |||||||| | | ||||| |  |||||||| |||||| || | ||||||||||||||||  |||||||| |||     
T  20063715 ttgttgtcaaaatcccgacttaaaacctaaaatccaaggttttgcggttttcttcatcttcaaggacttaaatccatagtagaatcccaaaataggcaaa 20063814  T
Q  153 atacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatattta 234  Q
    || |||| ||||| |||| |||| |||| |||||||| |||||| |||||||||||| |||||||||||| |||| ||||||    
T  20063815 attcatcgattttaattgcgattttacgttttcttatgaactaattcatttatgactgtataccatttatcacatgtattta 20063896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 161 - 241
Target Start/End: Complemental strand, 1690748 - 1690668
Alignment:
Q  161 attttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtattat 241  Q
    |||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||    
T  1690748 attttgattgcgattttacgatttcttataaactaagtcttttatgactatataccatttataaaatatatttaatattat 1690668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 53 - 181
Target Start/End: Complemental strand, 23863449 - 23863321
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    |||||||||||||| | ||||||||||||||||| || |||||| |||||||||||| ||||| || | |||||||||||||||| ||||||||| |||     
T  23863449 ttgttgtcaaaatcccgacttaaattctaaaatcgagaattttgcgactttcttcactttcaacgactgaaatccatagtagaatctcaaaataggcaaa 23863350  T
Q  153 atacatcaattttgattgtgattctacga 181  Q
    || |||| |||||| ||| |||| |||||    
T  23863349 atccatcgattttggttgcgattttacga 23863321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 53 - 175
Target Start/End: Original strand, 19491856 - 19491979
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattcta--aaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagaca 150  Q
    |||||||||||||||| | |||||| |||  ||||||||||||||| ||||||||||| ||| || || |||||||||||| |||| | ||||||||  |    
T  19491856 ttgttgtcaaaatctcgaattaaatcctataaaatctaggattttgcgactttcttcatcttaaacgactcaaatccatagcagaa-tccaaaataggta 19491954  T
Q  151 atatacatcaattttgattgtgatt 175  Q
    | || |||| |||||||||| ||||    
T  19491955 aaatccatcgattttgattgcgatt 19491979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 53 - 147
Target Start/End: Complemental strand, 5395776 - 5395682
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatag 147  Q
    ||||||||||||| |  || |||||  |||||| |||||||||| |||||| |||| ||| ||||| |||||||||||| ||||| |||||||||    
T  5395776 ttgttgtcaaaattttgacctaaatcataaaatataggattttgcgactttattcatcttaaatgactcaaatccatagcagaatctcaaaatag 5395682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 189 - 241
Target Start/End: Complemental strand, 25539138 - 25539086
Alignment:
Q  189 taaactaagtcatttatgactatataccatttataacatatatttagtattat 241  Q
    |||||| |||||||||||||||||||| || |||||||||||||||| |||||    
T  25539138 taaactgagtcatttatgactatatacaatatataacatatatttagcattat 25539086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 189 - 241
Target Start/End: Original strand, 34841717 - 34841769
Alignment:
Q  189 taaactaagtcatttatgactatataccatttataacatatatttagtattat 241  Q
    |||||| ||| |||||||||||||||| |||||||||||||||||| ||||||    
T  34841717 taaactgagttatttatgactatatacaatttataacatatatttattattat 34841769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 53 - 147
Target Start/End: Complemental strand, 1690890 - 1690796
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatag 147  Q
    ||||||||||||   | ||||||||  |||||| |||||||||| |||||||||||||||| | || ||| |||||||||| |||  ||||||||    
T  1690890 ttgttgtcaaaactccgacttaaatcttaaaatttaggattttgtgactttcttcaccttcgacgactcagatccatagtaaaatcccaaaatag 1690796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 19492079 - 19492120
Alignment:
Q  200 atttatgactatataccatttataacatatatttagtattat 241  Q
    |||||||||||||||| ||||||||||||||||||| |||||    
T  19492079 atttatgactatatacaatttataacatatatttagcattat 19492120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 196 - 241
Target Start/End: Original strand, 41002156 - 41002201
Alignment:
Q  196 agtcatttatgactatataccatttataacatatatttagtattat 241  Q
    |||||||||||||||||| | ||||||||||||||||||| |||||    
T  41002156 agtcatttatgactatatgcaatttataacatatatttagcattat 41002201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 234
Target Start/End: Original strand, 974467 - 974507
Alignment:
Q  194 taagtcatttatgactatataccatttataacatatattta 234  Q
    |||||||||||||||||||| | ||||||||||||||||||    
T  974467 taagtcatttatgactatatgcaatttataacatatattta 974507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 137
Target Start/End: Original strand, 16766711 - 16766795
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaat 137  Q
    ||||||||||||| |  ||||||||  |||||| |||||||||  || ||| ||||||||||| || |||||||||||| |||||    
T  16766711 ttgttgtcaaaattttgacttaaatcttaaaatttaggattttacgattttattcaccttcaacgaatcaaatccatagcagaat 16766795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 241
Target Start/End: Original strand, 16766922 - 16766974
Alignment:
Q  189 taaactaagtcatttatgactatataccatttataacatatatttagtattat 241  Q
    |||||| |||||||||||||| ||||| |||||||||| |||||||| |||||    
T  16766922 taaactgagtcatttatgactgtatacaatttataacaaatatttagcattat 16766974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 147
Target Start/End: Original strand, 15266083 - 15266177
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatag 147  Q
    ||||||||||||||   | |||||| |||||||  |||||||||  ||||| |||| ||||||||| ||||||||||  || |||| ||||||||    
T  15266083 ttgttgtcaaaatcatgatttaaatcctaaaattcaggattttgtaactttattcatcttcaatgattcaaatccatgttataattccaaaatag 15266177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 234
Target Start/End: Original strand, 26251658 - 26251696
Alignment:
Q  196 agtcatttatgactatataccatttataacatatattta 234  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  26251658 agtcatttatgactatatgcaatttataacatatattta 26251696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 235
Target Start/End: Complemental strand, 21869321 - 21869280
Alignment:
Q  194 taagtcatttatgactatataccatttataacatatatttag 235  Q
    ||||| |||||||||||||| | |||||||||||||||||||    
T  21869321 taagttatttatgactatatgcaatttataacatatatttag 21869280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 137
Target Start/End: Original strand, 31023255 - 31023308
Alignment:
Q  84 atctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaat 137  Q
    ||||||||||||| |||||| ||||| ||||| || |||||| |||||||||||    
T  31023255 atctaggattttgcgactttattcactttcaacgactcaaattcatagtagaat 31023308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 34841584 - 34841641
Alignment:
Q  80 taaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaat 137  Q
    |||||| ||||||| || |||||| ||||||||||| || |||||||||||| |||||    
T  34841584 taaaatttaggattctgcgactttattcaccttcaacgactcaaatccataggagaat 34841641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 229
Target Start/End: Complemental strand, 5395507 - 5395475
Alignment:
Q  197 gtcatttatgactatataccatttataacatat 229  Q
    ||||||||||||||||||| |||||||||||||    
T  5395507 gtcatttatgactatatacaatttataacatat 5395475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 109; Significance: 6e-55; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 53 - 241
Target Start/End: Complemental strand, 24725605 - 24725417
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    ||||||||||||||   |||||||| |||||||| | ||||||  ||||||||||||||||||  | ||||||||||||||||||  |||||||| |||     
T  24725605 ttgttgtcaaaatccagacttaaatcctaaaatccaagattttacgactttcttcaccttcaacaactcaaatccatagtagaatcgcaaaataggcaaa 24725506  T
Q  153 atacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtattat 241  Q
    || ||||||||||||||  ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24725505 atccatcaattttgattacgatttgacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtattat 24725417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 53 - 236
Target Start/End: Original strand, 27221419 - 27221602
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    ||||||| |||||| ||||||||||||||||||  ||||||||| ||||||||||| |||||| || |||||| ||||||||||| | ||||| | |||     
T  27221419 ttgttgttaaaatcccaacttaaattctaaaattcaggattttgcgactttcttcatcttcaacgactcaaatacatagtagaatcttaaaattggcaaa 27221518  T
Q  153 atacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagt 236  Q
    || |||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  27221519 atccatcgattttgattgcgattttacgatttcttataaactaagtcatttatgactatataccatttataacatatatatagt 27221602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 53 - 241
Target Start/End: Complemental strand, 44944977 - 44944785
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcac----cttcaatgagtcaaatccatagtagaatttcaaaataga 148  Q
    |||||||||||||| | |||||||| |||||||  ||||||||| ||||||||||||    |||||| || ||||||||||||||||||   |||||||     
T  44944977 ttgttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgactttcttcactcaccttcaacgattcaaatccatagtagaatcctaaaatagt 44944878  T
Q  149 caatatacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtattat 241  Q
    ||| || |||| |||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44944877 caaaatccatcgattttgattgggattttactatttcttataaactaagtcatttatgactatataccatttataacatatatttagtattat 44944785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 52 - 241
Target Start/End: Original strand, 5058529 - 5058718
Alignment:
Q  52 tttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaa 151  Q
    ||||||||||||||| | |||||||| |||||||  || |||||| || ||||||||||||||| ||   |||||||||||||||| | ||||||| |||    
T  5058529 tttgttgtcaaaatcccgacttaaatcctaaaattcagaattttgcgattttcttcaccttcaacgacctaaatccatagtagaatcttaaaataggcaa 5058628  T
Q  152 tatacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtattat 241  Q
     || |  | |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5058629 aatcctacgattttgattgcgattttacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtattat 5058718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 53 - 241
Target Start/End: Original strand, 14055252 - 14055440
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    ||||||| |||||| | ||||| || |||||||| | ||||||| |||||||||||||||||| || ||||||| |||||||||||  ||||||| |||     
T  14055252 ttgttgtgaaaatccccacttatatcctaaaatccaagattttgcgactttcttcaccttcaacgactcaaatctatagtagaattctaaaataggcaaa 14055351  T
Q  153 atacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtattat 241  Q
    || |||  |||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  14055352 atccatagattttgattgcgattttacgacttcttataaactaagtcatttatgactatataccatttataacatatatttaatattat 14055440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 53 - 241
Target Start/End: Original strand, 14365280 - 14365468
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    ||||||| |||||| | ||||| || |||||||| | ||||||| |||||||||||||||||| || ||||||| |||||||||||  ||||||| |||     
T  14365280 ttgttgtgaaaatccccacttatatcctaaaatccaagattttgcgactttcttcaccttcaacgactcaaatctatagtagaattctaaaataggcaaa 14365379  T
Q  153 atacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtattat 241  Q
    || |||  |||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  14365380 atccatagattttgattgcgattttacgacttcttataaactaagtcatttatgactatataccatttataacatatatttaatattat 14365468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 53 - 241
Target Start/End: Original strand, 4247357 - 4247545
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    |||||||||||||| ||| |||||| |||||||  |||||||||  ||||||||||| |||||  | | ||||||||||||||||  |||||||| |||     
T  4247357 ttgttgtcaaaatcccaatttaaatcctaaaattcaggattttgtaactttcttcactttcaacaacttaaatccatagtagaatcccaaaataggcaaa 4247456  T
Q  153 atacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtattat 241  Q
    || |||| |||||||||| |||| || ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  4247457 attcatcgattttgattgcgattttatgatttcttataaactaagtcatttatgactatatatcatttgtaacatatatttagtattat 4247545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 53 - 240
Target Start/End: Complemental strand, 24990199 - 24990012
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    |||||||||||||  | |||||||| | ||||| |||||||||| ||||||||| |||| ||| || ||||||||||||||||||   ||||||| |||     
T  24990199 ttgttgtcaaaattccgacttaaatccaaaaatttaggattttgtgactttctttacctccaacgactcaaatccatagtagaatcctaaaataggcaaa 24990100  T
Q  153 atacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtatta 240  Q
    || |||| ||||||||||  ||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  24990099 atccatcgattttgattgcaattttacgatttcttataaactaaatcatttatgactatatactatttataacatatatttagtatta 24990012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 53 - 232
Target Start/End: Original strand, 5715291 - 5715469
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    |||||||||||||| | |||||||| |||||||  ||||||||| |||||| | |||||||||  | | |||| |||||||||||| |||||||  |||     
T  5715291 ttgttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgacttt-tacaccttcaacaacttaaattcatagtagaattccaaaataagcaaa 5715389  T
Q  153 atacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatt 232  Q
    || |||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  5715390 attcatcgattttgattgtgattttacgatttcttataaactaagtcatttatgattatataccatttataacatatatt 5715469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 90 - 240
Target Start/End: Original strand, 17811385 - 17811535
Alignment:
Q  90 gattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaatatacatcaattttgattgtgattctacgatttcttat 189  Q
    ||||||| |||||| ||||||||||| || |||||||||||||||||||| ||||||||||| ||  ||| |||||||||| |||| |||||||||||||    
T  17811385 gattttgtgacttttttcaccttcaacgactcaaatccatagtagaattttaaaatagacaaaatcgatcgattttgattgcgattttacgatttcttat 17811484  T
Q  190 aaactaagtcatttatgactatataccatttataacatatatttagtatta 240  Q
    |||||||||||||||| | |||||||||||||||| ||||||||| |||||    
T  17811485 aaactaagtcatttataattatataccatttataaaatatatttaatatta 17811535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 53 - 235
Target Start/End: Complemental strand, 26281437 - 26281256
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    |||||||||||||  | ||||||||  ||||||  ||||||||| |||||||||||||||||| || |||||||||| |||||||| |||||||  |||     
T  26281437 ttgttgtcaaaattccgacttaaatcataaaattcaggattttgcgactttcttcaccttcaacgactcaaatccattgtagaattccaaaataagcaaa 26281338  T
Q  153 atacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttag 235  Q
    || |||| |||||| ||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  26281337 atccatcgattttg-ttgcgatttaacgatttcttataaactaagtcatttatgactatataccatttataacttatatttag 26281256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 54 - 241
Target Start/End: Complemental strand, 8346660 - 8346472
Alignment:
Q  54 tgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaata 153  Q
    |||||||||||||   || |||||  |||||| |||||||||| |||||||||||||||||| || ||||||||||||||||||  ||||||||  || |    
T  8346660 tgttgtcaaaatcctgacctaaatattaaaatttaggattttgcgactttcttcaccttcaacgactcaaatccatagtagaatcccaaaataggaaaaa 8346561  T
Q  154 tacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatatacca-tttataacatatatttagtattat 241  Q
    | |||| ||||| |||| |||| ||||||||||||||||||||||||| |||| ||||||| || ||||||||||||||||||||||||    
T  8346560 tccatcgattttaattgcgattttacgatttcttataaactaagtcatctatgtctatatatcattttataacatatatttagtattat 8346472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 53 - 205
Target Start/End: Complemental strand, 9685372 - 9685220
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    |||||||||||||||| ||||| || ||||||| |||||||||| |||||| ||||||||||| || ||||||||||| ||||||||||||||||||||     
T  9685372 ttgttgtcaaaatctcgacttatatcctaaaatttaggattttgcgacttttttcaccttcaacgactcaaatccatattagaatttcaaaatagacaaa 9685273  T
Q  153 atacatcaattttgattgtgattctacgatttcttataaactaagtcatttat 205  Q
    || |||| ||||| |||| |||| || ||||||||||||||||||||||||||    
T  9685272 atccatcgattttaattgcgattttatgatttcttataaactaagtcatttat 9685220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 53 - 241
Target Start/End: Complemental strand, 8343928 - 8343739
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    |||||||||||||||   | ||||| ||||||||  |||||||| |||||||||||||||||| || ||||||||||||||||||  |||||||   ||     
T  8343928 ttgttgtcaaaatcttggcctaaatcctaaaatcctggattttgcgactttcttcaccttcaacgactcaaatccatagtagaatcccaaaatatgaaaa 8343829  T
Q  153 atacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatatacca-tttataacatatatttagtattat 241  Q
    || |||||||||| |||| |||| ||||||||||||||||||||||||| ||||| ||||||||| |||||||  |||||||||||||||    
T  8343828 atccatcaattttaattgcgattttacgatttcttataaactaagtcatctatgattatataccattttataagttatatttagtattat 8343739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 53 - 239
Target Start/End: Complemental strand, 8330173 - 8329986
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    ||||||||||||||   || |||||||||||||  | ||||||| |||||||||||||||||| || ||||||||||||||||||  ||||||||  ||     
T  8330173 ttgttgtcaaaatcctgacctaaattctaaaattcatgattttgcgactttcttcaccttcaacgattcaaatccatagtagaatcccaaaataggaaaa 8330074  T
Q  153 atacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatatacca-tttataacatatatttagtatt 239  Q
    || |||  ||||| |||| |||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||    
T  8330073 attcattgattttaattgcgattttacgattttttataaactaagtcatttatgactatataccattttataacatatacttattatt 8329986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 122 - 241
Target Start/End: Complemental strand, 20570944 - 20570825
Alignment:
Q  122 aaatccatagtagaatttcaaaatagacaatatacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccattta 221  Q
    ||||| |||||||||| | ||||||||||| || |||| ||||||||||  ||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  20570944 aaatctatagtagaatctaaaaatagacaaaatccatcgattttgattgcaattttacgatttcttataaaataagtcatttatgactatataccattta 20570845  T
Q  222 taacatatatttagtattat 241  Q
    ||||||||||||||||||||    
T  20570844 taacatatatttagtattat 20570825  T

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Target: chr7; HSP #17
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 72 - 210
Target Start/End: Complemental strand, 27510052 - 27509914
Alignment:
Q  72 ttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaatatacatcaattttgattgt 171  Q
    ||||||||||||||  ||||||||| || ||||||||| | ||| || ||||||| |||||||||||| ||||||| ||| || |||||||||||||||     
T  27510052 ttaaattctaaaataaaggattttgcgattttcttcacatccaacgattcaaatctatagtagaatttaaaaataggcaaaattcatcaattttgattgc 27509953  T
Q  172 gattctacgatttcttataaactaagtcatttatgacta 210  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  27509952 gattttacgatttcttataaactaagtcatttatgacta 27509914  T

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Target: chr7; HSP #18
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 61 - 222
Target Start/End: Original strand, 11324988 - 11325148
Alignment:
Q  61 aaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaatatacatca 160  Q
    |||||| | |||||||| |||||||  | ||||||| || ||||||||||||||| || ||||||||||| |||||||  ||||||| ||| || ||| |    
T  11324988 aaaatcccgacttaaatcctaaaattcatgattttgggattttcttcaccttcaacgactcaaatccataatagaattctaaaataggcaaaattcat-a 11325086  T
Q  161 attttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttat 222  Q
    |||||||||| || | ||||||||||||||||||||||||||||||||||||||||| ||||    
T  11325087 attttgattgcgaatttacgatttcttataaactaagtcatttatgactatataccaattat 11325148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 53 - 205
Target Start/End: Complemental strand, 7730470 - 7730319
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    ||||||||||||||   |||||||| |||||||| ||| ||||| ||||||||||||||| ||  | ||||||||| ||||||||| ||||||||  ||     
T  7730470 ttgttgtcaaaatcctgacttaaatcctaaaatccagg-ttttgcgactttcttcacctttaacaactcaaatccacagtagaattccaaaataggaaaa 7730372  T
Q  153 atacatcaattttgattgtgattctacgatttcttataaactaagtcatttat 205  Q
    || |||| |||||||||| |||| |||||||||||||||||||| ||||||||    
T  7730371 atccatcgattttgattgagattttacgatttcttataaactaaatcatttat 7730319  T

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Target: chr7; HSP #20
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 53 - 190
Target Start/End: Original strand, 11326387 - 11326524
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    |||||||||||||| |||||||||| ||||||| |||||||||| |||||||||||||||||  || | |||||||||||||||| | ||||||| |||     
T  11326387 ttgttgtcaaaatcccaacttaaatcctaaaatttaggattttgcgactttcttcaccttcagcgactaaaatccatagtagaatcttaaaataggcaaa 11326486  T
Q  153 atacatcaattttgattgtgattctacgatttcttata 190  Q
    ||  ||| |||||||||| |||| ||| ||||| ||||    
T  11326487 atctatcgattttgattgcgattttacaatttcctata 11326524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 53 - 214
Target Start/End: Complemental strand, 22687792 - 22687631
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    |||||||||||||| | |||||||| |||||||  |||| |||| ||||||||||| ||||||  | |||||||||| | |||||  |||||||| |||     
T  22687792 ttgttgtcaaaatcccgacttaaatcctaaaattcaggaatttgcgactttcttcaacttcaacaactcaaatccatcgcagaatcccaaaataggcaaa 22687693  T
Q  153 atacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatata 214  Q
    || |||| |||||||||| |||| |||||||||||| |||||||  | || |||||||||||    
T  22687692 atccatcgattttgattgcgattttacgatttcttacaaactaaaaccttgatgactatata 22687631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 53 - 190
Target Start/End: Original strand, 39182261 - 39182397
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    |||||| |||||||   |||||||| |||||||||||||||||| ||||| |||||||||||| || | ||||||||||||||||  |||||||| |||     
T  39182261 ttgttgacaaaatcctgacttaaatcctaaaatctaggattttgcgactt-cttcaccttcaacgactgaaatccatagtagaatcccaaaataggcaaa 39182359  T
Q  153 atacatcaattttgattgtgattctacgatttcttata 190  Q
    || |||| |||||| ||| |||| ||| ||||||||||    
T  39182360 atccatcgattttggttgcgattttacaatttcttata 39182397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 162 - 234
Target Start/End: Original strand, 6916890 - 6916961
Alignment:
Q  162 ttttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatattta 234  Q
    ||||||||| |||| |||||||||||||||| |||||||||||||||| ||| ||| ||||||||||||||||    
T  6916890 ttttgattgcgattttacgatttcttataaattaagtcatttatgact-tattccagttataacatatattta 6916961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 59 - 175
Target Start/End: Original strand, 8571250 - 8571366
Alignment:
Q  59 tcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaatatacat 158  Q
    |||||||| | ||||||||  ||||||| ||||||||| ||||||||||||||| || || ||||||||||||||||||   |||||||| || |  |||    
T  8571250 tcaaaatcccgacttaaatcataaaatccaggattttgcgactttcttcacctttaacgactcaaatccatagtagaatcctaaaatagagaaaaaccat 8571349  T
Q  159 caattttgattgtgatt 175  Q
    | |||||||||| ||||    
T  8571350 cgattttgattgcgatt 8571366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 53 - 138
Target Start/End: Complemental strand, 21846553 - 21846469
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatt 138  Q
    |||||||||||||| | ||||||||||||||||  ||||||||| |||||| ||||| ||||| || ||| |||||||||||||||    
T  21846553 ttgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgacttt-ttcacattcaacgactcacatccatagtagaatt 21846469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 241
Target Start/End: Complemental strand, 26617587 - 26617416
Alignment:
Q  70 acttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccata--gtagaatttcaaaataga--caatatacatcaatttt 165  Q
    |||| ||| |||||||  ||||||||| |||||| ||||||||||| ||   |||| ||||  ||||||||  |||||| |  ||| ||  ||| |||||    
T  26617587 actttaatcctaaaattcaggattttgcgacttttttcaccttcaacgacataaattcatatagtagaattctaaaatataggcaaaatctatcgatttt 26617488  T
Q  166 gattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtattat 241  Q
    ||||| |||| |||||  |||| || ||||||||||||||||||||    ||||||||||||||||||||||||||    
T  26617487 gattgcgattttacgagatcttgtagactaagtcatttatgactat----catttataacatatatttagtattat 26617416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 53 - 147
Target Start/End: Original strand, 30294176 - 30294267
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatag 147  Q
    |||||||||||||| |||||||||| |||||||| ||||||||| || ||| |||||||||   || |||||||||||| | ||| |||||||||    
T  30294176 ttgttgtcaaaatcccaacttaaatcctaaaatccaggattttgtgattttattcaccttc---gactcaaatccatagcaaaatctcaaaatag 30294267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 194 - 241
Target Start/End: Complemental strand, 21846433 - 21846386
Alignment:
Q  194 taagtcatttatgactatataccatttataacatatatttagtattat 241  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  21846433 taagtcatttatgactatatatcatttataacatatatttaatattat 21846386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 196 - 241
Target Start/End: Complemental strand, 1981321 - 1981276
Alignment:
Q  196 agtcatttatgactatataccatttataacatatatttagtattat 241  Q
    |||||||||||||||||| | ||||||||||||||||||| |||||    
T  1981321 agtcatttatgactatatgcaatttataacatatatttagcattat 1981276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 137
Target Start/End: Complemental strand, 8630086 - 8630002
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaat 137  Q
    |||||||||||||| | |||||| | | ||||||||||||||||  |||||  | | |||||| || ||||||||||||||||||    
T  8630086 ttgttgtcaaaatcgcgacttaagtcccaaaatctaggattttgcaactttacttaacttcaacgactcaaatccatagtagaat 8630002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 240
Target Start/End: Complemental strand, 21157669 - 21157625
Alignment:
Q  196 agtcatttatgactatataccatttataacatatatttagtatta 240  Q
    ||||||||| || ||||||||||||||||||||||||||| ||||    
T  21157669 agtcatttacgattatataccatttataacatatatttagcatta 21157625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 241
Target Start/End: Complemental strand, 17809119 - 17809068
Alignment:
Q  190 aaactaagtcatttatgactatataccatttataacatatatttagtattat 241  Q
    ||||| |||||||||||| ||||| | ||||||||||||||||||| |||||    
T  17809119 aaactgagtcatttatgattatatgcaatttataacatatatttagcattat 17809068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 232
Target Start/End: Complemental strand, 26565540 - 26565497
Alignment:
Q  189 taaactaagtcatttatgactatataccatttataacatatatt 232  Q
    |||||| ||||||||||||||||||||  |||||||||||||||    
T  26565540 taaactgagtcatttatgactatatacagtttataacatatatt 26565497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 190
Target Start/End: Complemental strand, 21846369 - 21846335
Alignment:
Q  156 catcaattttgattgtgattctacgatttcttata 190  Q
    |||||||||||||||||||| ||||||||||||||    
T  21846369 catcaattttgattgtgattttacgatttcttata 21846335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 234
Target Start/End: Complemental strand, 25842729 - 25842691
Alignment:
Q  196 agtcatttatgactatataccatttataacatatattta 234  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  25842729 agtcatttatgactatatgcaatttataacatatattta 25842691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 143
Target Start/End: Original strand, 4574489 - 4574562
Alignment:
Q  70 acttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaa 143  Q
    |||||||| |||||||| || |||||| ||||||  |||||||||| || |||||| ||| | |||||||||||    
T  4574489 acttaaatcctaaaatccagaattttgcgactttactcaccttcaacgattcaaattcattgcagaatttcaaa 4574562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 241
Target Start/End: Complemental strand, 27509379 - 27509351
Alignment:
Q  213 taccatttataacatatatttagtattat 241  Q
    |||||||||||||||||||||||||||||    
T  27509379 taccatttataacatatatttagtattat 27509351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 108; Significance: 2e-54; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 53 - 240
Target Start/End: Original strand, 5922050 - 5922237
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    |||||||||||||| | |||||||| |||||||| ||||||||| |||||||||||||||||| || | | ||||||||||||||  ||||||||||||     
T  5922050 ttgttgtcaaaatcccgacttaaatcctaaaatccaggattttgtgactttcttcaccttcaacgacttatatccatagtagaatcccaaaatagacaaa 5922149  T
Q  153 atacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtatta 240  Q
    || |||| |||||||||| |||| | |||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||    
T  5922150 atccatcgattttgattgcgattttgcgatttcttataaattaggtcatttatgactatataccattcataacatatatttagtatta 5922237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 54 - 241
Target Start/End: Original strand, 15294672 - 15294859
Alignment:
Q  54 tgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaata 153  Q
    |||||| |||||| | |||||||| |||||||  ||||||||| |||||| ||||||||||| || ||||||| ||||||||||  |||||||| ||| |    
T  15294672 tgttgtaaaaatcccgacttaaatcctaaaattcaggattttgcgacttttttcaccttcaacgactcaaatcgatagtagaataccaaaataggcaaaa 15294771  T
Q  154 tacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtattat 241  Q
    | |||| |||||||||| |||| ||| |||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||    
T  15294772 tccatcgattttgattgcgattttacaatttcttataaactaagtcatttatgactatacactatttgtaacatatatttagtattat 15294859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 54 - 241
Target Start/End: Original strand, 15475041 - 15475228
Alignment:
Q  54 tgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaata 153  Q
    |||||| |||||| | |||||||| |||||||  ||||||||| |||||| ||||||||||| || ||||||| ||||||||||  |||||||| ||| |    
T  15475041 tgttgtaaaaatcccgacttaaatcctaaaattcaggattttgcgacttttttcaccttcaacgactcaaatcgatagtagaataccaaaataggcaaaa 15475140  T
Q  154 tacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtattat 241  Q
    | |||| |||||||||| |||| ||| |||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||    
T  15475141 tccatcgattttgattgcgattttacaatttcttataaactaagtcatttatgactatacactatttgtaacatatatttagtattat 15475228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 54 - 236
Target Start/End: Complemental strand, 19704583 - 19704400
Alignment:
Q  54 tgttgtcaaaatctcaacttaaattctaaaat-ctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    ||||||||||||| ||||||||||  |||||| | ||| ||||| |||||||||||||||||| || ||||||||||||||||||| || ||||| |||     
T  19704583 tgttgtcaaaatcccaacttaaatcttaaaattcaaggtttttgcgactttcttcaccttcaacgactcaaatccatagtagaattccataataggcaaa 19704484  T
Q  153 atacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagt 236  Q
    || |||| ||||||||||  ||| ||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||    
T  19704483 atccatcgattttgattgcaattttacgatttcttataaaccaagttatttatgactatataccatttgtaacatatatttagt 19704400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 53 - 241
Target Start/End: Original strand, 11879601 - 11879789
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    |||||||||||||    |||||||| |||||||  |||||||||  ||||||||||| ||||| || ||||||| ||||||||||   |||||||  ||     
T  11879601 ttgttgtcaaaattctgacttaaatcctaaaattcaggattttgcaactttcttcactttcaacgactcaaatctatagtagaatcctaaaataggaaaa 11879700  T
Q  153 atacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtattat 241  Q
    || |||| |||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  11879701 attcatcgattttgattgcgattttacgatttcttataaactaagtaatttatgactatataccatttataacatatatttagtattat 11879789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 53 - 241
Target Start/End: Original strand, 11897017 - 11897205
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    |||||||||||||    |||||||| |||||||  |||||||||  ||||||||||| ||||| || ||||||| ||||||||||   |||||||  ||     
T  11897017 ttgttgtcaaaattctgacttaaatcctaaaattcaggattttgcaactttcttcactttcaacgactcaaatctatagtagaatcctaaaataggaaaa 11897116  T
Q  153 atacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtattat 241  Q
    || |||| |||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  11897117 attcatcgattttgattgcgattttacgatttcttataaactaagtaatttatgactatataccatttataacatatatttagtattat 11897205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 53 - 241
Target Start/End: Original strand, 45403030 - 45403218
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    |||||||||||||| | ||||||||||||||||| | ||||||| ||||||||| |||||||| || | |||||||||| ||||| ||||||||  |||     
T  45403030 ttgttgtcaaaatcgcgacttaaattctaaaatccaagattttgcgactttcttgaccttcaacgacttaaatccatagaagaatctcaaaataagcaaa 45403129  T
Q  153 atacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtattat 241  Q
    || |||| |||||||||| |||| ||||||| ||||| ||| |||||||||||||  ||||||||||||||||||||||||| ||||||    
T  45403130 atccatcgattttgattgcgattttacgattccttatcaaccaagtcatttatgataatataccatttataacatatatttaatattat 45403218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 56 - 239
Target Start/End: Original strand, 31424167 - 31424350
Alignment:
Q  56 ttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaatata 155  Q
    |||||||||||   ||||||||||||||||  ||||||||  |||||||||| | ||||| || |||||||||||| |||||  |||||||| ||| ||     
T  31424167 ttgtcaaaatcctgacttaaattctaaaattcaggattttacgactttcttccctttcaacgactcaaatccatagaagaatcccaaaataggcaaaatc 31424266  T
Q  156 catcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtatt 239  Q
    |||  |||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  31424267 cattgattttgattgcgattttacgatttcttataaactaagtcgtttatgactatataccaattataacatatatttagtatt 31424350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 91 - 241
Target Start/End: Original strand, 6810861 - 6811010
Alignment:
Q  91 attttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaatatacatcaattttgattgtgattctacgatttcttata 190  Q
    |||||| |||||||||||||||||| || |||||||||||||||||||| ||||||| ||| || |||| |||||||||  |||| ||||||||| ||||    
T  6810861 attttgcgactttcttcaccttcaacgactcaaatccatagtagaattttaaaataggcaaaat-catcgattttgattacgattttacgatttcatata 6810959  T
Q  191 aactaagtcatttatgactatataccatttataacatatatttagtattat 241  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  6810960 aactaagtcatttataactatatatcatttataacatatatttagtattat 6811010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 101 - 241
Target Start/End: Original strand, 23142224 - 23142364
Alignment:
Q  101 tttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaatatacatcaattttgattgtgattctacgatttcttataaactaagtca 200  Q
    |||||||| |||||| || | ||||||||||||||||   ||||||| ||| || |||| |||||||||| |||| |||||||||||||||| |||||||    
T  23142224 tttcttcaacttcaacgactgaaatccatagtagaatcctaaaataggcaaaattcatcgattttgattgcgattttacgatttcttataaattaagtca 23142323  T
Q  201 tttatgactatataccatttataacatatatttagtattat 241  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  23142324 tttatgactatataccatttataacatatatttagtattat 23142364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 72 - 240
Target Start/End: Complemental strand, 29384425 - 29384258
Alignment:
Q  72 ttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaatatacatcaattttgattgt 171  Q
    |||||| |||||||||  ||||||| |||||||||||||||||| || |||||||||||||| |||   ||||||| ||| || |||| |||| |||||     
T  29384425 ttaaatcctaaaatcttagattttgcgactttcttcaccttcaacgactcaaatccatagtataatccaaaaataggcaaaattcatcgattt-gattgc 29384327  T
Q  172 gattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtatta 240  Q
    |||| ||||||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||    
T  29384326 gattttacgatttcttataaaacaattcatttatgactatataccatttataacatatatttagtatta 29384258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 70 - 237
Target Start/End: Complemental strand, 22910313 - 22910146
Alignment:
Q  70 acttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaatatacatcaattttgatt 169  Q
    |||||||| ||||||| |||||||||  |||||||||||| ||||| || ||||||| |||||||||| | ||||||| ||| || |||  |||||||||    
T  22910313 acttaaatcctaaaatttaggattttacgactttcttcacattcaacgactcaaatctatagtagaatcttaaaataggcaaaatccattgattttgatt 22910214  T
Q  170 gtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagta 237  Q
    | |||| || ||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||    
T  22910213 gcgattttaagatttcttataaattaagtaatttatgactatataccatttataacatatacttagta 22910146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 56 - 239
Target Start/End: Complemental strand, 3094378 - 3094185
Alignment:
Q  56 ttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaatata 155  Q
    |||||||||| || ||||||||  ||||||  |||||||||  ||||||||||||||||| || ||||||||||||||||||   ||||||| ||| ||     
T  3094378 ttgtcaaaatttcgacttaaatcttaaaattcaggattttgctactttcttcaccttcaacgactcaaatccatagtagaatcctaaaataggcaaaatc 3094279  T
Q  156 catcaattttgattgtgattctacgatttctt----------ataaactaagtcatttatgactatataccatttataacatatatttagtatt 239  Q
    |||| |||||||||| |||| |||||||| ||          ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3094278 catcgattttgattgcgattttacgattttttttttttttatataaactaagtcatttatgactatataccatttataacatatatttagtatt 3094185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 53 - 239
Target Start/End: Complemental strand, 27836592 - 27836406
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    |||||||||||||   |||||| || |||||||  ||||||||| |  ||| |||||||||||  | | |||||||||||||||||  ||||||  |||     
T  27836592 ttgttgtcaaaattcaaacttagatcctaaaattcaggattttgcggttttattcaccttcaacaactgaaatccatagtagaattctaaaataagcaaa 27836493  T
Q  153 atacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtatt 239  Q
    || ||||||||||||||   ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  27836492 attcatcaattttgattacaattttacaatttcttataaactaagtcatttatgactatataccatttataacatgtatttagtatt 27836406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 71 - 231
Target Start/End: Original strand, 32424354 - 32424511
Alignment:
Q  71 cttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaatatacatcaattttgattg 170  Q
    ||||||||||||||| |||||||||  |||||| ||||   | || || |||||| |||||||||||   ||||||||||| ||  ||  ||||||||||    
T  32424354 cttaaattctaaaatttaggattttatgacttttttca---ttaacgattcaaattcatagtagaatcctaaaatagacaaaatttatagattttgattg 32424450  T
Q  171 tgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatat 231  Q
     |||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  32424451 cgattttacgatttattatatactaagtcatttatgactatataccatttataacatatat 32424511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 100 - 240
Target Start/End: Complemental strand, 7489368 - 7489224
Alignment:
Q  100 ctttcttcaccttcaatgagtcaaatccatagtagaatttcaaa----atagacaatatacatcaattttgattgtgattctacgatttcttataaacta 195  Q
    |||||||||||||||| || | |||||| ||||||||||  |||    |||||||| ||  ||| ||||||||||  ||| || ||||||||||||| ||    
T  7489368 ctttcttcaccttcaacgactaaaatccgtagtagaattctaaataaaatagacaaaatttatcgattttgattgcaattttatgatttcttataaatta 7489269  T
Q  196 agtcatttatgactatataccatttataacatatatttagtatta 240  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  7489268 agtcatttatgactatatatcatttataacatatatttagtatta 7489224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 53 - 234
Target Start/End: Original strand, 17646994 - 17647177
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    |||||||||||||  | ||||||||  ||||||  ||||||||| |||||||||||||||||| || |||||| |||||||||||  ||||||||  ||     
T  17646994 ttgttgtcaaaattccgacttaaatcataaaattcaggattttgcgactttcttcaccttcaacgactcaaattcatagtagaatcccaaaataggaaaa 17647093  T
Q  153 atacatcaattttgattgtgattctacgatttcttataaactaagtcatttatg--actatataccatttataacatatattta 234  Q
    || |||| ||||||||||| |||  ||||||||||||||||  |||||||| |   | |||||||||||| ||| |||||||||    
T  17647094 attcatcgattttgattgttatttaacgatttcttataaacctagtcattttttttattatataccatttgtaaaatatattta 17647177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 156 - 234
Target Start/End: Complemental strand, 9212280 - 9212202
Alignment:
Q  156 catcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatattta 234  Q
    |||| |||||||||| |||| || ||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||    
T  9212280 catcgattttgattgcgattttaagatttcttataaactaaatcatttatgaccatataccatttataacctatattta 9212202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 70 - 242
Target Start/End: Complemental strand, 6292453 - 6292281
Alignment:
Q  70 acttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaatatacatcaattttgatt 169  Q
    ||||||||  |||||| || ||||||| |||||| |||| ||| || || ||||| |||||||| ||||  ||||||   || || || | |||||||||    
T  6292453 acttaaatcttaaaatttaagattttgtgacttttttcatctttaacgactcaaacccatagtataattctaaaataagaaaaattcaacgattttgatt 6292354  T
Q  170 gtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtattata 242  Q
    | | |  ||| |||| |||||| ||||||||||||| |||||||||||||||||| ||||||||| |||||||    
T  6292353 gcggtcttacaatttattataatctaagtcatttatcactatataccatttataaaatatatttaatattata 6292281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 53 - 115
Target Start/End: Complemental strand, 17788434 - 17788372
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaa 115  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||||||  ||||||||||    
T  17788434 ttgttgtcaaaatcgcaacttaaattttaaaatctaggattttgagactttactcaccttcaa 17788372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 127
Target Start/End: Complemental strand, 477175 - 477101
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatcc 127  Q
    ||||||||||||||   |||||||| |||||||| ||||||||| ||||||||||||||||||||| | ||||||    
T  477175 ttgttgtcaaaatcctgacttaaatcctaaaatccaggattttgtgactttcttcaccttcaatgacttaaatcc 477101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 53 - 131
Target Start/End: Complemental strand, 15761567 - 15761489
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatag 131  Q
    |||||||||||||||| |||||||| ||||| || ||||||||| || ||| || |||||||| || |||||| |||||    
T  15761567 ttgttgtcaaaatctcgacttaaatcctaaactccaggattttgtgagtttatttaccttcaacgactcaaattcatag 15761489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 53 - 131
Target Start/End: Complemental strand, 24056696 - 24056618
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatag 131  Q
    ||||| |||||||||  |||||||| |||||||| ||||||||| |||||| ||||| || || || ||||||||||||    
T  24056696 ttgttatcaaaatcttgacttaaatcctaaaatccaggattttgcgactttattcacatttaacgactcaaatccatag 24056618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 234
Target Start/End: Complemental strand, 40541819 - 40541781
Alignment:
Q  196 agtcatttatgactatataccatttataacatatattta 234  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  40541819 agtcatttatgactatatgcaatttataacatatattta 40541781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 16752156 - 16752192
Alignment:
Q  198 tcatttatgactatataccatttataacatatattta 234  Q
    |||||||||||||||| | ||||||||||||||||||    
T  16752156 tcatttatgactatatgcaatttataacatatattta 16752192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 30240757 - 30240697
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttc 113  Q
    ||||| |||||||| | | |||||||||||||| |||||||||  |||||| |||||||||    
T  30240757 ttgttatcaaaatcgcgatttaaattctaaaatataggatttttcgactttattcaccttc 30240697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 104; Significance: 6e-52; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 53 - 240
Target Start/End: Original strand, 18843716 - 18843903
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    ||||||| |||||  | |||||||| ||| |||  ||||||||| |||||||||||||||||| || |||||||||| |||||||  ||||||||||||     
T  18843716 ttgttgttaaaattccgacttaaatcctataattcaggattttgcgactttcttcaccttcaacgactcaaatccattgtagaatcccaaaatagacaaa 18843815  T
Q  153 atacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtatta 240  Q
    || |||| ||||||||||  ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  18843816 attcatcgattttgattgcaattatacgatttcttataaactaagtcatttatgattatataccatttataacatatatttagtatta 18843903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 53 - 239
Target Start/End: Complemental strand, 21059283 - 21059098
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    |||||||||||||| | | |||||| |||||||||||||||||| |||||||||||| ||||| || |||||||||| |||||||  | |||||| |||     
T  21059283 ttgttgtcaaaatcccgatttaaatcctaaaatctaggattttgcgactttcttcactttcaacgactcaaatccat-gtagaatccctaaataggcaaa 21059185  T
Q  153 atacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtatt 239  Q
    || |||| |||||||||| |||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  21059184 attcatcgattttgattgcgattttacgatttcttataaacgaagtcatttatgactataaaccatttataacatatatttagtatt 21059098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 53 - 241
Target Start/End: Complemental strand, 18051658 - 18051473
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    |||||||||||||| | |||||||| ||||||| |||||||||| ||||||||||| |||||| || ||||||| |||||||||||  ||||||| |||     
T  18051658 ttgttgtcaaaatcccgacttaaatcctaaaatataggattttgcgactttcttcaacttcaacgactcaaatctatagtagaattctaaaataggcaaa 18051559  T
Q  153 atacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtattat 241  Q
    || |||| |||||||||| |||| |||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||    
T  18051558 atccatcgattttgattgcgattgtacgatttcttataaactaagtcatttatgac-atata--atttataacatatatttagtattat 18051473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 53 - 241
Target Start/End: Original strand, 43234869 - 43235057
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    |||||||||||||| |||||||||| |||||||  ||||||||| |||||||||||||||||| || | ||||||||||||||||   |||||||  ||     
T  43234869 ttgttgtcaaaatcccaacttaaatcctaaaattcaggattttgcgactttcttcaccttcaacgacttaaatccatagtagaatcctaaaataggaaaa 43234968  T
Q  153 atacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtattat 241  Q
    || |||| ||||||||||||||| ||||||||||||| |||||||||||||||| ||||| ||||||||||||||||| ||| ||||||    
T  43234969 atccatcgattttgattgtgattttacgatttcttatcaactaagtcatttatgtctataaaccatttataacatatacttactattat 43235057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 53 - 241
Target Start/End: Original strand, 19578943 - 19579131
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    |||||||||||||  ||||||||||  ||||||| ||||||||| || ||||||||||||||| || | ||||||||||||||||  |||||||  |||     
T  19578943 ttgttgtcaaaattccaacttaaatcataaaatccaggattttgcgattttcttcaccttcaacgacttaaatccatagtagaatcccaaaataagcaaa 19579042  T
Q  153 atacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtattat 241  Q
    || |||| |||||||||| || | ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||    
T  19579043 atccatcgattttgattgcgactttacgatttcttataaactaagtcatttatgactatttaccattcataacatatatttggtattat 19579131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 52 - 240
Target Start/End: Complemental strand, 23172561 - 23172369
Alignment:
Q  52 tttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaa 151  Q
    ||||||||||||||| | |||||||| ||||||| |||||||||| ||||||||||| |||||| || | ||||||||||||||||  ||||||||||||    
T  23172561 tttgttgtcaaaatcccgacttaaatcctaaaatttaggattttgcgactttcttcatcttcaacgacttaaatccatagtagaatcccaaaatagacaa 23172462  T
Q  152 tatac----atcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtatta 240  Q
     || |    ||| |||||||| | |||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  23172461 aattcatcgatcgattttgatcgcgattttacgattttttataaactaagtcatttatgactatataccatttgtaacatatatttaatatta 23172369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 101 - 240
Target Start/End: Original strand, 20320992 - 20321130
Alignment:
Q  101 tttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaatatacatcaattttgattgtgattctacgatttcttataaactaagtca 200  Q
    |||||||||||||||||| | |||||||||||| |||| ||||||||| || || |||||| |||||||| |||| ||||||| ||||||||||||||||    
T  20320992 tttcttcaccttcaatgactaaaatccatagtaaaattccaaaatagataaaattcatcaactttgattgcgattttacgatt-cttataaactaagtca 20321090  T
Q  201 tttatgactatataccatttataacatatatttagtatta 240  Q
    |||||||| ||||| ||||||||||||||||||| |||||    
T  20321091 tttatgaccatatatcatttataacatatatttaatatta 20321130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 53 - 214
Target Start/End: Complemental strand, 38158382 - 38158221
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    |||||||||||||  | |||||||| |||||||||||||||||| ||||||||| || |||||  | ||||||||| ||||||||  ||||||||||||     
T  38158382 ttgttgtcaaaattccgacttaaatcctaaaatctaggattttgcgactttcttgactttcaacaactcaaatccagagtagaatcccaaaatagacaaa 38158283  T
Q  153 atacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatata 214  Q
    || |||  |||||| |||| ||| |||||||||||||||||||| |||||||||||||||||    
T  38158282 atccattgattttggttgttattttacgatttcttataaactaaatcatttatgactatata 38158221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 60 - 241
Target Start/End: Complemental strand, 27340307 - 27340130
Alignment:
Q  60 caaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaatatacatc 159  Q
    ||||||| | ||||||||  |||||| || ||||||| ||||||||||| |||||| || ||||||| |||||||||| | ||||||| ||| || ||||    
T  27340307 caaaatcccgacttaaatcataaaatttatgattttgcgactttcttcatcttcaacgactcaaatctatagtagaatcttaaaataggcaaaattcatc 27340208  T
Q  160 aattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtattat 241  Q
     |||||||||| |||| ||  ||||||||||||||||||||||    |||||||||||||| ||||||||||||||||||||    
T  27340207 gattttgattgagattttaatatttcttataaactaagtcatt----actatataccatttgtaacatatatttagtattat 27340130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 63 - 241
Target Start/End: Complemental strand, 41688782 - 41688605
Alignment:
Q  63 aatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaatatacatcaat 162  Q
    |||| |||||||||| ||||||| | ||||||||  | ||||||||||||||| || | ||||  |||||| ||||  ||||||  ||| || |||| ||    
T  41688782 aatcccaacttaaatcctaaaat-tcggattttgcaattttcttcaccttcaacgacttaaatttatagtaaaattctaaaataagcaaaattcatcgat 41688684  T
Q  163 tttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtattat 241  Q
    |||||||| |||| |||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||    
T  41688683 tttgattgcgattttacgatttcttataaactaaatcatttataactatataccattcataacatatatttagtattat 41688605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 101 - 241
Target Start/End: Original strand, 19979648 - 19979788
Alignment:
Q  101 tttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaatatacatcaattttgattgtgattctacgatttcttataaactaagtca 200  Q
    |||||||| |||||| || |||||| ||| |||||||  ||||| |  ||| || |||  |||||||||| |||| ||||||||||||||||||||||||    
T  19979648 tttcttcatcttcaacgactcaaattcatggtagaatcccaaaacacgcaaaatccatggattttgattgcgattttacgatttcttataaactaagtca 19979747  T
Q  201 tttatgactatataccatttataacatatatttagtattat 241  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  19979748 tttatgactatataccatttataacatatatttattattat 19979788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 53 - 218
Target Start/End: Complemental strand, 22645847 - 22645681
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    |||||||||||||| | |||||||| |||||||| || |||||| |||||||||||||||||| || | |||||||||||| |||  |||||||   ||     
T  22645847 ttgttgtcaaaatcccgacttaaatcctaaaatccagtattttgcgactttcttcaccttcaacgatttaaatccatagtaaaatcccaaaataagtaaa 22645748  T
Q  153 atacatcaattttgattgtgattctacgatttcttataaactaa-gtcatttatgactatataccat 218  Q
     | |||| |||||||||| |||| ||| |||||||||||||||| ||||||||||||||||||||||    
T  22645747 ttccatctattttgattgcgattttacaatttcttataaactaatgtcatttatgactatataccat 22645681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 54 - 126
Target Start/End: Complemental strand, 19042516 - 19042444
Alignment:
Q  54 tgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatc 126  Q
    ||||||||||||| |||||||||||||||||| || ||||||| |||||||||||||||||| || |||||||    
T  19042516 tgttgtcaaaatcccaacttaaattctaaaatttaagattttgtgactttcttcaccttcaacgactcaaatc 19042444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 53 - 175
Target Start/End: Original strand, 20923719 - 20923841
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    |||||||||||||| | |||||||| |||||||| || |||||| |||||||||||||||||| ||   ||||||||||||||||   ||||||| |||     
T  20923719 ttgttgtcaaaatcccgacttaaatcctaaaatccagaattttgcgactttcttcaccttcaacgacctaaatccatagtagaatcctaaaataggcaaa 20923818  T
Q  153 atacatcaattttgattgtgatt 175  Q
     | |||| |||||||||| ||||    
T  20923819 gtccatcgattttgattgcgatt 20923841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 196 - 241
Target Start/End: Original strand, 26021464 - 26021509
Alignment:
Q  196 agtcatttatgactatataccatttataacatatatttagtattat 241  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||    
T  26021464 agtcatttatgactatatacaatttataacatatatttagcattat 26021509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 196 - 241
Target Start/End: Original strand, 24648160 - 24648205
Alignment:
Q  196 agtcatttatgactatataccatttataacatatatttagtattat 241  Q
    |||||||||||||||||||| |||||||| |||||||||| |||||    
T  24648160 agtcatttatgactatatacaatttataatatatatttagcattat 24648205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 234
Target Start/End: Original strand, 19377742 - 19377782
Alignment:
Q  194 taagtcatttatgactatataccatttataacatatattta 234  Q
    |||||||||||||||||||| | ||||||||||||||||||    
T  19377742 taagtcatttatgactatatccaatttataacatatattta 19377782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 241
Target Start/End: Complemental strand, 22984799 - 22984754
Alignment:
Q  196 agtcatttatgactatataccatttataacatatatttagtattat 241  Q
    |||||| ||||||||||| | ||||||||||||||||||| |||||    
T  22984799 agtcatctatgactatatgcaatttataacatatatttagcattat 22984754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 240
Target Start/End: Complemental strand, 19042404 - 19042368
Alignment:
Q  204 atgactatataccatttataacatatatttagtatta 240  Q
    |||||||||||| |||| |||||||||||||||||||    
T  19042404 atgactatatacaatttctaacatatatttagtatta 19042368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 234
Target Start/End: Original strand, 41427548 - 41427588
Alignment:
Q  194 taagtcatttatgactatataccatttataacatatattta 234  Q
    |||||||||||||||||||| | |||||||| |||||||||    
T  41427548 taagtcatttatgactatatgcaatttataatatatattta 41427588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 53 - 241
Target Start/End: Original strand, 8444 - 8632
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    |||||||||||||| | |||||||| |||||||| | ||||||| |||||||||||||||||| || | ||||| || |||||||  |||||||  |||     
T  8444 ttgttgtcaaaatccctacttaaatcctaaaatccacgattttgcgactttcttcaccttcaacgacttaaatctattgtagaatcccaaaataagcaaa 8543  T
Q  153 atacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtattat 241  Q
    || |||  |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8544 atccattgattttgattgcgattttacgatttcttataaactaagtcatttatgactatataccatttataccatatatttagtattat 8632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 53 - 241
Target Start/End: Complemental strand, 7583 - 7395
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    ||||||| | |||| | ||||||||||||||||  ||||||||| ||||||||| |||||||| ||   ||||||||||||||||   ||||||| |||     
T  7583 ttgttgttagaatcccgacttaaattctaaaattcaggattttgcgactttctttaccttcaacgaacaaaatccatagtagaatcctaaaataggcaaa 7484  T
Q  153 atacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgactatataccatttataacatatatttagtattat 241  Q
    || |||| ||||| |||| |||| ||||||||||||||||| |||| |||||||| ||||||||| ||| |||||||||||||||||||    
T  7483 attcatcgattttaattgcgattttacgatttcttataaacgaagtaatttatgaatatataccaattagaacatatatttagtattat 7395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 53 - 237
Target Start/End: Complemental strand, 93832 - 93649
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagacaat 152  Q
    |||||||||||||| | |||||||| |||||||| || |||||||   |||||||||| ||||  | |||||||||||| ||||||  ||||||| | |     
T  93832 ttgttgtcaaaatcccgacttaaatcctaaaatccagaattttgat--tttcttcaccctcaacaactcaaatccatagaagaattctaaaataggcgaa 93735  T
Q  153 atacatcaattttgattgtgattctacgatttcttataaactaagtcatttatgact-atataccatttataacatatatttagta 237  Q
    || |||| |||||||||| |||| ||||||||||| |||| |||||| ||||||||| |||||| ||| |||||||||||||||||    
T  93734 atccatcgattttgattgcgattttacgatttcttttaaattaagtcgtttatgactaatatacgattcataacatatatttagta 93649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0510 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0510
Description:

Target: scaffold0510; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 70 - 190
Target Start/End: Complemental strand, 212 - 91
Alignment:
Q  70 acttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaatttcaaaatagac-aatatacatcaattttgat 168  Q
    |||||||| |||||||  ||||||||| |||||||||||| ||||| || |||||||||||||| ||||  ||||||| | || || |||| ||||||||    
T  212 acttaaatcctaaaatgcaggattttgcgactttcttcacgttcaacgactcaaatccatagtaaaattctaaaataggcgaaaatccatcgattttgat 113  T
Q  169 tgtgattctacgatttcttata 190  Q
    || |||| ||| ||||||||||    
T  112 tgagattttacaatttcttata 91  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 58786 - 58736
Alignment:
Q  177 tacgatttcttataaactaagtcatttatgactatataccatttataacat 227  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  58786 tacgatttcttataaactaaatcatttatgactatataccacttataacat 58736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 189 - 241
Target Start/End: Complemental strand, 8952 - 8900
Alignment:
Q  189 taaactaagtcatttatgactatataccatttataacatatatttagtattat 241  Q
    |||||| |||||||||||||||||||| | ||||||||||||||||| |||||    
T  8952 taaactgagtcatttatgactatatacaacttataacatatatttagcattat 8900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 53 - 131
Target Start/End: Complemental strand, 9148 - 9070
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatag 131  Q
    ||||||||||||||   | ||||||| |||||| |||||||||| || ||| ||||||||||| || ||||||||||||    
T  9148 ttgttgtcaaaatcctgatttaaattttaaaatgtaggattttgtgattttattcaccttcaacgactcaaatccatag 9070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 130
Target Start/End: Complemental strand, 48916 - 48839
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccata 130  Q
    ||||||| |||||  | |||||||| ||||||||||| ||||||  ||||| ||||||||||| || |||||||||||    
T  48916 ttgttgtgaaaattccgacttaaatcctaaaatctagaattttgcaactttattcaccttcaacgactcaaatccata 48839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 137
Target Start/End: Complemental strand, 35187 - 35103
Alignment:
Q  53 ttgttgtcaaaatctcaacttaaattctaaaatctaggattttgagactttcttcaccttcaatgagtcaaatccatagtagaat 137  Q
    |||||||||||||||| ||||||||||||||||  |  ||||||  ||||| |||||||| || || |||||| ||| |||||||    
T  35187 ttgttgtcaaaatctcgacttaaattctaaaattcataattttggaactttattcacctttaacgactcaaattcattgtagaat 35103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 234
Target Start/End: Complemental strand, 38531 - 38491
Alignment:
Q  194 taagtcatttatgactatataccatttataacatatattta 234  Q
    |||||| ||||||||||||||| ||||||||||||||||||    
T  38531 taagtcctttatgactatatacaatttataacatatattta 38491  T

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Target: scaffold0061 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 234
Target Start/End: Complemental strand, 76308 - 76273
Alignment:
Q  199 catttatgactatataccatttataacatatattta 234  Q
    ||||||||||||||||| ||||||||||||||||||    
T  76308 catttatgactatatacaatttataacatatattta 76273  T

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Target: scaffold0526 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0526
Description:

Target: scaffold0526; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 242
Target Start/End: Original strand, 8288 - 8333
Alignment:
Q  196 agtcatttatgactatataccatttataacatatatttagtattata 242  Q
    |||||||||||||||||| | |||||| |||||||||||||||||||    
T  8288 agtcatttatgactatatgcaatttat-acatatatttagtattata 8333  T

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Target: scaffold1178 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1178
Description:

Target: scaffold1178; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 241
Target Start/End: Original strand, 466 - 511
Alignment:
Q  196 agtcatttatgactatataccatttataacatatatttagtattat 241  Q
    |||||||||||||||||| | ||||||| ||||||||||| |||||    
T  466 agtcatttatgactatatgcaatttatatcatatatttagcattat 511  T

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Target: scaffold0027 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 234
Target Start/End: Complemental strand, 133112 - 133075
Alignment:
Q  197 gtcatttatgactatataccatttataacatatattta 234  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  133112 gtcatttatgactatatgcaatttataacatatattta 133075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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