View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17277_low_131 (Length: 250)
Name: NF17277_low_131
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_low_131 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 17593733 - 17593973
Alignment:
| Q |
1 |
tttgaggttatgtaagaaacttgaacacaatcagagtacactgatttgattccattcttggacgatggaattgaatcagatctcgaagcagacattgaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
17593733 |
tttgaggttatgtaagaaacttgaacacaatcagagtacactgatttgattccattcttggacgatggaattgaatcagatctcaaagcagacattgaag |
17593832 |
T |
|
| Q |
101 |
catcattaccatcagaatcatacctacataccaaataacaaaacatagatacgattaacataaacataccaaaacaatagtagtatcatatatatattta |
200 |
Q |
| |
|
||||| |||| |||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||| |
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|
| T |
17593833 |
catcactaccttcagaatcatacctacatactaaataac-aaacataaatacgattaacataaacatatcaaaacaatagtagtatc--atatatattta |
17593929 |
T |
|
| Q |
201 |
tcagaaagtgttaacgcagttatcatgaaattaattcatctcac |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
17593930 |
tcagaaagtgttaacgcagttatcatgaaattaattcatttcac |
17593973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 34743569 - 34743329
Alignment:
| Q |
1 |
tttgaggttatgtaagaaacttgaacacaatcagagtacactgatttgattccattcttggacgatggaattgaatcagatctcgaagcagacattgaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
34743569 |
tttgaggttatgtaagaaacttgaacacaatcagagtacactgatttgattccattcttggacgatggaattgaatcagatctcaaagcagacattgaag |
34743470 |
T |
|
| Q |
101 |
catcattaccatcagaatcatacctacataccaaataacaaaacatagatacgattaacataaacataccaaaacaatagtagtatcatatatatattta |
200 |
Q |
| |
|
||||| |||| |||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||| |
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|
| T |
34743469 |
catcactaccttcagaatcatacctacatactaaataac-aaacataaatacgattaacataaacatatcaaaacaatagtagtatc--atatatattta |
34743373 |
T |
|
| Q |
201 |
tcagaaagtgttaacgcagttatcatgaaattaattcatctcac |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
34743372 |
tcagaaagtgttaacgcagttatcatgaaattaattcatttcac |
34743329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 177
Target Start/End: Complemental strand, 45551154 - 45550982
Alignment:
| Q |
6 |
ggttatgtaagaaacttgaacacaatcagagtacactgatttgattccattcttggacgatggaattgaatcagatctcgaagcagacattgaagcatca |
105 |
Q |
| |
|
|||||||| ||||| | ||||||| | |||||||| |||| | ||||| | || || ||||||||||| |||| || ||||| ||||| |||||| |
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|
| T |
45551154 |
ggttatgtgagaaagtggaacacagttagagtacaatgatctaattccgctgttagatgatggaattgatccagaccttaaagcaaccattgcagcatcc |
45551055 |
T |
|
| Q |
106 |
ttaccatcagaatcatacctacataccaaataacaaa-acatagatacgattaacataaacataccaaaacaa |
177 |
Q |
| |
|
||||| |||||||||||||| || |||||||| ||| | ||| ||| |||||||||||||||| || ||||| |
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|
| T |
45551054 |
ttaccttcagaatcatacctgcagcccaaataataaacatataaatatgattaacataaacatatcataacaa |
45550982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 125
Target Start/End: Complemental strand, 45546578 - 45546457
Alignment:
| Q |
4 |
gaggttatgtaagaaacttgaacacaatcagagtacactgatttgattccattcttggacgatggaattgaatcagatctcgaagcagacattgaagcat |
103 |
Q |
| |
|
|||||||||||||| | | |||||| |||||||| |||||| | ||||| | || || |||| ||||||| |||| || ||||| ||||| ||||| |
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|
| T |
45546578 |
gaggttatgtaagagagtggaacacggtcagagtaaactgatctacttccactgttagatgatgaaattgaaccagagcttatagcagccattgcagcat |
45546479 |
T |
|
| Q |
104 |
cattaccatcagaatcatacct |
125 |
Q |
| |
|
| ||||| |||||||||||||| |
|
|
| T |
45546478 |
ccttaccttcagaatcatacct |
45546457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 21531380 - 21531140
Alignment:
| Q |
1 |
tttgaggttatgtaagaaacttgaacacaatcagagtacactgatttgattccattcttggacgatggaattgaatcagatctcgaagcagacattgaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
21531380 |
tttgaggttatgtaagaaacttgaacacaatcagagtacactgatttgattccattcttggacgatggaattgaatcagatctcaaagcagacattgaag |
21531281 |
T |
|
| Q |
101 |
catcattaccatcagaatcatacctacataccaaataacaaaacatagatacgattaacataaacataccaaaacaatagtagtatcatatatatattta |
200 |
Q |
| |
|
||||| |||| |||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||| |
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|
| T |
21531280 |
catcactaccttcagaatcatacctacatactaaataac-aaacataaatacgattaacataaacatatcaaaacaatagtagtatc--atatatattta |
21531184 |
T |
|
| Q |
201 |
tcagaaagtgttaacgcagttatcatgaaattaattcatctcac |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
21531183 |
tcagaaagtgttaacgcagttatcatgaaattaattcatttcac |
21531140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 35167321 - 35167081
Alignment:
| Q |
1 |
tttgaggttatgtaagaaacttgaacacaatcagagtacactgatttgattccattcttggacgatggaattgaatcagatctcgaagcagacattgaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
35167321 |
tttgaggttatgtaagaaacttgaacacaatcagagtacactgatttgattccattcttagacgatggaattgaatcagatctcaaagcagacattgaag |
35167222 |
T |
|
| Q |
101 |
catcattaccatcagaatcatacctacataccaaataacaaaacatagatacgattaacataaacataccaaaacaatagtagtatcatatatatattta |
200 |
Q |
| |
|
||||| |||| |||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
35167221 |
catcactaccttcagaatcatacctacatactaaataac-aaacataaatacgattaacataaacatatcaaaacaatagtagtatc--atatatattta |
35167125 |
T |
|
| Q |
201 |
tcagaaagtgttaacgcagttatcatgaaattaattcatctcac |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
35167124 |
tcagaaagtgttaacgcagttatcatgaaattaattcatttcac |
35167081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 43313761 - 43314001
Alignment:
| Q |
1 |
tttgaggttatgtaagaaacttgaacacaatcagagtacactgatttgattccattcttggacgatggaattgaatcagatctcgaagcagacattgaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
43313761 |
tttgaggttatgtaagaaacttgaacacaatcagagtacactgatttgattccattcttagacaatggaattgaatcagatctcaaagcagacattgaag |
43313860 |
T |
|
| Q |
101 |
catcattaccatcagaatcatacctacataccaaataacaaaacatagatacgattaacataaacataccaaaacaatagtagtatcatatatatattta |
200 |
Q |
| |
|
||||| |||| |||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
43313861 |
catcactaccttcagaatcatacctacatactaaataac-aaacataaatacgattaacataaacatatcaaaacaatagtagtatc--atatatattta |
43313957 |
T |
|
| Q |
201 |
tcagaaagtgttaacgcagttatcatgaaattaattcatctcac |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
43313958 |
tcagaaagtgttaacgcagttatcatgaaattaattcatttcac |
43314001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 50134743 - 50134974
Alignment:
| Q |
1 |
tttgaggttatgtaagaaacttgaacacaatcagagtacactgatttgattccattcttggacgatggaattgaatcagatctcgaagcagacattgaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||| |||||||||||| ||| || ||| |||||||||| |
|
|
| T |
50134743 |
tttgaggttatgtaagaaacttgaacacaatcagagtacactgatttgcttccattgtcggatgatggaattgaactagagcttaaagtggacattgaag |
50134842 |
T |
|
| Q |
101 |
catcattaccatcagaatcatacctacataccaaataacaaaacatagatacgattaacataaacataccaaaacaatagtagtatcatatatatattta |
200 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| ||| ||| ||| |||||||||||||||| |||||| ||||||||| |||||| ||| |
|
|
| T |
50134843 |
catcattaccttcagaatcatacctacataccaaataac-aaatataaatatgattaacataaacatatcaaaac---agtagtatc--atatatttttt |
50134936 |
T |
|
| Q |
201 |
tcagaaagtgttaacgcagttatcatgaaattaattca |
238 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
50134937 |
gcagaaagtgttaacgcagttatcctgaaatcaattca |
50134974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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