View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_low_134 (Length: 250)
Name: NF17277_low_134
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_low_134 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 6 - 229
Target Start/End: Complemental strand, 42494531 - 42494304
Alignment:
| Q |
6 |
aggagcagagagtaagtgaatgagacaactttgaaattctaactgcaatttgtttagtgctttcgtgaaatatatttagtgttgtgtgcaatattttagt |
105 |
Q |
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| T |
42494531 |
aggagcagacagtaagtgaatgagactactttgaaattctaactgcaatttgtttagtgctttcgtgaaatatatttagtgttgtgtgcaatgttttagt |
42494432 |
T |
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| Q |
106 |
ccttttcccaacagaaaacaaccgagctactgaagttag----caaggctagataaagtttggtattcaacttcaaaaacggatgagaaactgtggttgt |
201 |
Q |
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| T |
42494431 |
ccttttcccaacagaaaacaaccgagctactgaagttagcaagcaaggctagataaagtttggtattcaacttcaaaaacggatgagaaactgtggttgt |
42494332 |
T |
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| Q |
202 |
ttttgtatttcccaaatatcaatgaata |
229 |
Q |
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| T |
42494331 |
ttttgtatttctcaaatatcaaagaata |
42494304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 93 - 212
Target Start/End: Complemental strand, 42496261 - 42496136
Alignment:
| Q |
93 |
gcaatattttagtccttttcccaacagaaaacaaccgagctactgaagttagcaag-----gctagataaagtttggtattcaacttcaaaaacggat-g |
186 |
Q |
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|||||||||||||||||| ||| | ||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||| | |
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| T |
42496261 |
gcaatattttagtcctttccccgaaagaaaacaacccagctactgatgttagcaagcaaaggctagataaagtttggtattcaactttaaaaacggatgg |
42496162 |
T |
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| Q |
187 |
agaaactgtggttgtttttgtatttc |
212 |
Q |
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| T |
42496161 |
agaaactgtggttgtttttgtatttc |
42496136 |
T |
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