View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17277_low_135 (Length: 249)

Name: NF17277_low_135
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17277_low_135
NF17277_low_135
[»] chr2 (2 HSPs)
chr2 (122-211)||(4474385-4474474)
chr2 (1-92)||(4474507-4474598)
[»] chr3 (5 HSPs)
chr3 (137-202)||(51377239-51377304)
chr3 (121-203)||(47740325-47740408)
chr3 (141-202)||(3107430-3107491)
chr3 (119-202)||(2668463-2668547)
chr3 (122-174)||(33237696-33237748)
[»] chr8 (1 HSPs)
chr8 (155-202)||(21557798-21557846)
[»] chr5 (2 HSPs)
chr5 (137-193)||(5874507-5874563)
chr5 (119-167)||(26394818-26394866)
[»] chr7 (1 HSPs)
chr7 (6-40)||(44158531-44158565)
[»] chr4 (1 HSPs)
chr4 (6-66)||(33614669-33614729)


Alignment Details
Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 122 - 211
Target Start/End: Complemental strand, 4474474 - 4474385
Alignment:
Q  122 gttatgaggaaatacctccttgaaattttacacttatgtgtaaaataccctctgaaattgataataatcaaacaaattggtcagtatgac 211  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4474474 gttatgaggaaatacctccttaaaattttacacttatgtgtaaaataccctctgaaattgataataatcaaacaaattggtcagtatgac 4474385  T

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Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 4474598 - 4474507
Alignment:
Q  1 tggagtttgactgtctacgtggcactgccacatgtctgacatgtcacgccatgtcatagggggtaagtttttttttcccatttttccttttt 92  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  4474598 tggaatttgactgtctacgtggcaccgccacatgtctgacatgtcacgccatgtcacagggggtaagtttttttttcccatttttccttttt 4474507  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 202
Target Start/End: Original strand, 51377239 - 51377304
Alignment:
Q  137 ctccttgaaattttacacttatgtgtaaaataccctctgaaattgataataatcaaacaaattggt 202  Q
    ||||||||||||| ||||||  ||| |||||||||| | ||||||||| |||||||||||||||||    
T  51377239 ctccttgaaatttcacacttgagtgcaaaataccctttaaaattgatagtaatcaaacaaattggt 51377304  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 203
Target Start/End: Complemental strand, 47740408 - 47740325
Alignment:
Q  121 agttatgaggaaatacctcc-ttgaaattttacacttatgtgtaaaataccctctgaaattgataataatcaaacaaattggtc 203  Q
    ||||||||| |||||||||| ||||||||||| |||| |||| ||||| |    |||||||||||||||||||  |||||||||    
T  47740408 agttatgagcaaatacctccgttgaaattttatacttgtgtgcaaaatgcttcatgaaattgataataatcaactaaattggtc 47740325  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 202
Target Start/End: Original strand, 3107430 - 3107491
Alignment:
Q  141 ttgaaattttacacttatgtgtaaaataccctctgaaattgataataatcaaacaaattggt 202  Q
    |||||||||| |||||||||  ||||| ||| ||||| || ||||||||||| |||||||||    
T  3107430 ttgaaattttgcacttatgtacaaaatgccccctgaagtttataataatcaagcaaattggt 3107491  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 202
Target Start/End: Complemental strand, 2668547 - 2668463
Alignment:
Q  119 acagttatgaggaaatacctcc-ttgaaattttacacttatgtgtaaaataccctctgaaattgataataatcaaacaaattggt 202  Q
    ||||||||||| ||||||| || || |||||||||| ||||||| ||||| ||   ||||| ||||| |||||||| ||||||||    
T  2668547 acagttatgagcaaataccgcctttaaaattttacaattatgtgcaaaatgcctcttgaaactgatactaatcaaataaattggt 2668463  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 174
Target Start/End: Complemental strand, 33237748 - 33237696
Alignment:
Q  122 gttatgaggaaatacctccttgaaattttacacttatgtgtaaaataccctct 174  Q
    |||||||  ||||||| || |||||||||||||||||||| ||||| ||||||    
T  33237748 gttatgatcaaatacccccctgaaattttacacttatgtgcaaaatgccctct 33237696  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 202
Target Start/End: Original strand, 21557798 - 21557846
Alignment:
Q  155 ttatgtgtaaaa-taccctctgaaattgataataatcaaacaaattggt 202  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||||    
T  21557798 ttatgtgtaaaaataccttctgaaattgataataatcaaacaaattggt 21557846  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 5874507 - 5874563
Alignment:
Q  137 ctccttgaaattttacacttatgtgtaaaataccctctgaaattgataataatcaaa 193  Q
    |||| |||||||||||||||||||| ||||||| |  ||||||||||||||||||||    
T  5874507 ctccctgaaattttacacttatgtgcaaaatactccatgaaattgataataatcaaa 5874563  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 167
Target Start/End: Complemental strand, 26394866 - 26394818
Alignment:
Q  119 acagttatgaggaaatacctccttgaaattttacacttatgtgtaaaat 167  Q
    ||||||||||  ||||||| || |||||||||||||||||||| |||||    
T  26394866 acagttatgatcaaatacccccctgaaattttacacttatgtgcaaaat 26394818  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 44158565 - 44158531
Alignment:
Q  6 tttgactgtctacgtggcactgccacatgtctgac 40  Q
    |||||||||||||||||||||||||||||||||||    
T  44158565 tttgactgtctacgtggcactgccacatgtctgac 44158531  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 33614669 - 33614729
Alignment:
Q  6 tttgactgtctacgtggcactgccacatgtctgacatgtcacgccatgtcatagggggtaa 66  Q
    |||||||||||| ||||||||||||| ||| |||| ||||| |||| |||| ||| |||||    
T  33614669 tttgactgtctatgtggcactgccacgtgtttgacgtgtcatgccacgtcacaggtggtaa 33614729  T

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