View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_low_14 (Length: 598)
Name: NF17277_low_14
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 571; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 1 - 587
Target Start/End: Complemental strand, 26484484 - 26483898
Alignment:
| Q |
1 |
cattccagctttgcctgcaattttgttgcatcctggtactaaatcttgcaaatacttcatcctttcgcttattttttcccttctaacctgcacaaaacag |
100 |
Q |
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| T |
26484484 |
cattccagctttgcctgcaattttgttgcatcctggtactaaatcttgcaaatacttcatcctttcgcttattttttcccttctaacctgcacaaaacag |
26484385 |
T |
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| Q |
101 |
aacaaacaaacattggactttaaactccaagtagtaaaccgaaaaatcatattctattgcacaaaataaatgtttatttgatttcattgtagaaactatc |
200 |
Q |
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| T |
26484384 |
aacaaacaaacattggactttaaactccaagtagtaaaccgaaaaatcatattctattgtacaaaataaatgtctatttgatttcattgtagaaactatc |
26484285 |
T |
|
| Q |
201 |
tatattgttaaaacagattctacctcctattaacggtaattttagcattaaaccatattaaaaaattgttatatgtaaaatgtttttacactatcaatca |
300 |
Q |
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| T |
26484284 |
tatattgttaaaacagattctacctcctattaacggttattttagcattaaaccatattaaaaaattgttatatgtaaaatgtttttacactatcaatca |
26484185 |
T |
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| Q |
301 |
atcatgatcgttggaataacttttataatcatacatattatgagtgtattgataatcacattttgttaaccaaataatgacaaattaagagaaaaatagt |
400 |
Q |
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| T |
26484184 |
atcatgatcgttggaataacttttataatcatacatattatgagtgtattgataatcacattttgttaaccaaataatgacaaattaagagaaaaatagt |
26484085 |
T |
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| Q |
401 |
gaaagataagaattgtgtactcactctttcagctaagctatgactatcagtagcttgaccacgacgtgctcgaacatgaatgtaatcaggcttatgattt |
500 |
Q |
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| T |
26484084 |
gaaagataagaattgtgtactcactctttcagctaagctatgactatcagtagcttgaccacgacgtgctcgaacatgaatgtaatcaggcttatgattt |
26483985 |
T |
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| Q |
501 |
tgaatctctgaaccttttgaattttccttggaaccaacatcgtcacaattttctctatttttcaactttgtattcttatttcccttt |
587 |
Q |
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| T |
26483984 |
tgaatctctgaaccttttgaattttccttggaaccaacatcatcacaattttctctatttttcaactttgtattcttatttcccttt |
26483898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 54616070 - 54615979
Alignment:
| Q |
1 |
cattccagctttgcctgcaattttgttgcatcctggtactaaatcttgcaaatacttcatcctttcgcttattttttcccttctaacctgca |
92 |
Q |
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|||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| || || || || ||||||||||||||||||| |
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| T |
54616070 |
cattccagcttttcctgtaattttgttgcatcctggtactaaatcttgcaaatacttcattctctcactaatcttttcccttctaacctgca |
54615979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 418 - 489
Target Start/End: Complemental strand, 54615899 - 54615828
Alignment:
| Q |
418 |
tactcactctttcagctaagctatgactatcagtagcttgaccacgacgtgctcgaacatgaatgtaatcag |
489 |
Q |
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|||| ||||||||||||||||||||||| || || ||||| ||||||||||||||||||||||||||||||| |
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| T |
54615899 |
tacttactctttcagctaagctatgactgtcggtggcttggccacgacgtgctcgaacatgaatgtaatcag |
54615828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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