View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_low_140 (Length: 246)
Name: NF17277_low_140
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_low_140 |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 13 - 225
Target Start/End: Original strand, 49170758 - 49170970
Alignment:
| Q |
13 |
attattctaggatttagagattgaagtatggaagtaaacaaaataaaaaggacatagagtataccttagacttccatgaattttaaaaagagaagaaagg |
112 |
Q |
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| T |
49170758 |
attattctaggatttagagattgaagtatggaagtaaacaaaataaaaaggacatagagtataccttagacttccatgaattttaaaaagagaagaaagg |
49170857 |
T |
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| Q |
113 |
agtggcttgattgacttatgaaaaggggtttgtttcgcaagaatatagtaagggcttggttgtctctaaaactttgttgtttgcagatagtaaagaaagg |
212 |
Q |
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| T |
49170858 |
agtggcttgattgacttatgaaaaggggtttgtgtcgcaagaatataataagggcttggttgtctctaaaactttgttgtttgcagatagtaaagaaagg |
49170957 |
T |
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| Q |
213 |
accacatgccaaa |
225 |
Q |
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||||||||||||| |
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| T |
49170958 |
accacatgccaaa |
49170970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 24 - 225
Target Start/End: Complemental strand, 8421345 - 8421144
Alignment:
| Q |
24 |
atttagagattgaagtatggaagtaaacaaaataaaaaggacatagagtataccttagacttccatgaattttaaaaagagaagaaaggagtggcttgat |
123 |
Q |
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| T |
8421345 |
atttagagattgaagtatggaagtaaacaaaataaaaaggacatagagtataccttagacttccatgaattttaaaaagagaagaaaggagtggcttgat |
8421246 |
T |
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| Q |
124 |
tgacttatgaaaaggggtttgtttcgcaagaatatagtaagggcttggttgtctctaaaactttgttgtttgcagatagtaaagaaaggaccacatgcca |
223 |
Q |
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| T |
8421245 |
tgacttatgaaaaggggtttgtgtcgcaagaattgagtaaggtcttggttgtctctaaaactttgttgtttgcagatagtaaagaaaggaccacatgcca |
8421146 |
T |
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| Q |
224 |
aa |
225 |
Q |
| |
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|| |
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| T |
8421145 |
aa |
8421144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 47 - 205
Target Start/End: Original strand, 36732736 - 36732895
Alignment:
| Q |
47 |
taaacaaaataaaaaggacatagagtataccttagacttccatgaattttaaaaagagaagaaaggagtggcttgattgacttatgaaaaggggtttgtt |
146 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||| ||| |
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| T |
36732736 |
taaaaaaaataaaaaggacatagagtataccttagacttccatgaattttaaaaagagaagaaatgagtggcttgatagacttatgataagggg-ctgtg |
36732834 |
T |
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| Q |
147 |
tcgcaagaatatagtaa--gggcttggttgtctctaaaactttgttgtttgcagatagtaa |
205 |
Q |
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| T |
36732835 |
tcgcaaggatatagtaaaggggcatggttgtttctagaactttgttgtttgtagatagtaa |
36732895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 95
Target Start/End: Complemental strand, 24422996 - 24422915
Alignment:
| Q |
13 |
attattctaggatttagagattgaagtatggaagtaaacaaaataaaaaggacatagagtataccttagacttccatgaattt |
95 |
Q |
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|||||||||||||| |||||||| | ||||| ||||| ||| ||| |||||||||||||||||||||||||| ||| |||||| |
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| T |
24422996 |
attattctaggatt-agagattggaatatgggagtaagcaagatagaaaggacatagagtataccttagactcccaagaattt |
24422915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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