View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_low_146 (Length: 241)
Name: NF17277_low_146
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_low_146 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 2149735 - 2149510
Alignment:
| Q |
1 |
tttatatcaatcttcattatattgttcatatacctctctcatctcattagtcattttcttaccttcattcgattttgttttatgttaattcaatgtatca |
100 |
Q |
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| T |
2149735 |
tttatatcaatcttcattatattgttcatatacctctctcatctcattagtcattttcttaccttcattcgattttattttatgttaattcaatgtatca |
2149636 |
T |
|
| Q |
101 |
aattgtataaaatgagactaaacatcaaacacgaacaactctatacgaacattttttccccataggttatctcttttggagctagtttatggagcactgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2149635 |
aattgtataaaatgagactaaacatcaaacacgaacaactctatacgaaccttttttccccataggttatctcttttggagctagtttatggagcactgt |
2149536 |
T |
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| Q |
201 |
gagacaccattgttaagagtcctcac |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
2149535 |
gagacaccattgttaagagtcctcac |
2149510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 2145261 - 2145147
Alignment:
| Q |
1 |
tttatatcaatcttcattatattgttcatatacctctctcatctcattagtcattttcttaccttcattcgattttgttttatgttaattcaatgtatca |
100 |
Q |
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||||||||||||||||||||| |||| | |||| ||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
2145261 |
tttatatcaatcttcattataatgttaacatacttcttccatctcattagtcattttcttaccttcattcgattttatgttatgttaattcaatgtatca |
2145162 |
T |
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| Q |
101 |
aattgtataaaatga |
115 |
Q |
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||||||||||||||| |
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| T |
2145161 |
aattgtataaaatga |
2145147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 115 - 221
Target Start/End: Complemental strand, 2144420 - 2144311
Alignment:
| Q |
115 |
agactaaacatcaaacacgaacaactctatacgaacattttttccccataggttatctcttttggagctagtt---tatggagcactgtgagacaccatt |
211 |
Q |
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||||||||||||||| |||||||||| ||||| ||| |||| ||| |||||| ||||||||||||||||||| | | |||||||||||||||||||| |
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| T |
2144420 |
agactaaacatcaaatacgaacaactatatacaaactttttctccatataggtcatctcttttggagctagttctatctagagcactgtgagacaccatt |
2144321 |
T |
|
| Q |
212 |
gttaagagtc |
221 |
Q |
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|||||||||| |
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| T |
2144320 |
gttaagagtc |
2144311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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