View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_low_149 (Length: 238)
Name: NF17277_low_149
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_low_149 |
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Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 34687951 - 34687730
Alignment:
| Q |
1 |
aaatcagatgaaattactcagtgaagcacctaagttgttagattctttggaattcatcgtagttggaaaacatacatctaactttaattaattcatggga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34687951 |
aaatcagatgaaattactcagtgaagcacctaagttgttagattctttggaattcatcgtagttggaaaacatacatctaactttaattaattcatggga |
34687852 |
T |
|
| Q |
101 |
taaactatcagatgaaattcaatattaattcaaagtactttcaatgaatatgaggaatttcaatgagaagaggaattttacacaatcaatcatataagaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34687851 |
taaactatcagatgaaattcaatattaattcaaagtactttcaatgaatatgaggaatttcaatgagaagaggaattttacacaatcaatcatataagaa |
34687752 |
T |
|
| Q |
201 |
agaaatttcttaatctcaaatc |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
34687751 |
agaaatttcttaatctcaaatc |
34687730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 26985892 - 26985681
Alignment:
| Q |
1 |
aaatcagatgaaattactcagtgaagcacctaagttgttagattctttggaattcatcgtagttggaaaacatacatctaactttaattaattcatggga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26985892 |
aaatcagatgaaattactcagtgaagcacctaagttgttagattctttggaattcatcgtagttggaaaacatacatctaactttaattaattcatggga |
26985793 |
T |
|
| Q |
101 |
taaactatcagatgaaattcaatattaattcaaagtactttcaatgaatatgaggaatttcaatgagaagaggaattttacacaatcaatcatataagaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
26985792 |
taaactatcagatgaaattcaatattaattcaaagtagtttcaatgaatatgaggaatttcaatgagaagagg----------aatcaatcatataagaa |
26985703 |
T |
|
| Q |
201 |
agaaatttcttaatctcaaatc |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
26985702 |
agaaatttcttaatctcaaatc |
26985681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 27079478 - 27079625
Alignment:
| Q |
1 |
aaatcagatgaaattactcagtgaagcacctaagttgttagattctttggaattcatcgtagttggaaaacatacatctaactttaattaattcatggga |
100 |
Q |
| |
|
|||||| ||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
27079478 |
aaatcaaatgaaattactgggtgaagtacctaagttgttagattctttggaattaatcgtagttggcaaacatacatccaactttaattaattcatggga |
27079577 |
T |
|
| Q |
101 |
taaactatcagatgaaattcaatattaattcaaagtactttcaatgaa |
148 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
27079578 |
taaactatcaaatgaaattcaatattaattcaaagtactttcaatgaa |
27079625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 27025727 - 27025601
Alignment:
| Q |
1 |
aaatcagatgaaattactcagtgaagcacctaagttgttagattctttggaattcatcgtagttggaaaacatacatctaactttaattaattcatggga |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||| |||||||| | |||||||||||||||||||| |
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|
| T |
27025727 |
aaatcagatgaaattactcggtgaagcacctaagttgttagattcgttggaattaatcgtagttggctaacatacagccaactttaattaattcatgggc |
27025628 |
T |
|
| Q |
101 |
taaactatcagatgaaattcaatatta |
127 |
Q |
| |
|
|||||| ||| |||||||||||||||| |
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|
| T |
27025627 |
taaactgtcaaatgaaattcaatatta |
27025601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 86 - 220
Target Start/End: Complemental strand, 30228291 - 30228143
Alignment:
| Q |
86 |
aattaattcatgggataaactatcagatgaaattcaatattaattcaaagtactttcaatgaatatgaggaatttcaatgagaagaggaattttacaca- |
184 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||| |
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| T |
30228291 |
aattaattcatgggataaactatcagatgaaattcagtattaattcaaagtactttcaatcaagatgaggaatttcaatgaggagaggaattttacacat |
30228192 |
T |
|
| Q |
185 |
-------------atcaatcatataagaaagaaatttcttaatctcaaa |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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| T |
30228191 |
atacccaaaatcgatcaatcatataagaaagaaatttcttaatctcaaa |
30228143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 30228355 - 30228304
Alignment:
| Q |
1 |
aaatcagatgaaattactcagtgaagcacctaagttgttagattctttggaa |
52 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
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|
| T |
30228355 |
aaatcagatgaaattactcggtgaagcacctgagttgttagattctttggaa |
30228304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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